Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0813
         (341 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132860-18|CAB60498.1|  133|Caenorhabditis elegans Hypothetical...    37   0.004
U70853-1|AAB09143.2|  439|Caenorhabditis elegans Hypothetical pr...    30   0.50 
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr...    29   1.2  
Z81521-1|CAB04226.1|  319|Caenorhabditis elegans Hypothetical pr...    29   1.2  
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr...    29   1.2  
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr...    29   1.2  
Z99280-3|CAE18018.1|  215|Caenorhabditis elegans Hypothetical pr...    28   2.0  
Z83317-3|CAB05897.1|  217|Caenorhabditis elegans Hypothetical pr...    28   2.0  
U40416-1|AAA81410.2|  822|Caenorhabditis elegans Protein kinase ...    28   2.0  
AF403714-1|AAK97497.1|  822|Caenorhabditis elegans serine/threon...    28   2.0  
AF024502-7|AAB70377.3|  352|Caenorhabditis elegans Hypothetical ...    27   3.5  
Z69902-1|CAA93767.1|  689|Caenorhabditis elegans Hypothetical pr...    27   4.7  
U58758-14|AAB93433.2|  842|Caenorhabditis elegans High incidence...    26   8.1  
AF178755-1|AAD52669.1|  842|Caenorhabditis elegans HIM-14 protei...    26   8.1  

>AL132860-18|CAB60498.1|  133|Caenorhabditis elegans Hypothetical
           protein Y56A3A.19 protein.
          Length = 133

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 22/67 (32%), Positives = 33/67 (49%)
 Frame = +3

Query: 141 RTSVTCRLSTVSLQQKFSTIKAAVKIYKSQALQNGNEKHGIRKYSGGPPLTLDLIKSRVL 320
           R +V+  L TVS++   S      ++     L        IR+YS   PLT   ++ R++
Sbjct: 3   RVAVSAALRTVSVRA-LSNASVQQRVITPILLSAQKPSFQIRQYSAKAPLTKKTLEERIV 61

Query: 321 LVLQLYD 341
           LVL LYD
Sbjct: 62  LVLSLYD 68


>U70853-1|AAB09143.2|  439|Caenorhabditis elegans Hypothetical
           protein M01H9.2 protein.
          Length = 439

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +1

Query: 169 PFRCSKSSAQLKPLSKYTKVRPFRMGTRNMVSAST 273
           P  C K  A+LKP SK TK  P     RN  + ST
Sbjct: 78  PRLCGKCYAKLKPDSKRTKTIPVTQFKRNPAATST 112


>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +3

Query: 132 TTYRTSVTCRLSTVSLQQKFSTIKAAVKIYKSQALQNGN 248
           T Y+T V    STVS+ Q  + I +A  IYK     +GN
Sbjct: 380 TNYKTLVVIIRSTVSMNQNLNAISSA--IYKELTSNDGN 416


>Z81521-1|CAB04226.1|  319|Caenorhabditis elegans Hypothetical
           protein F32A11.1 protein.
          Length = 319

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 224 KSGPSEWERETWYPQVQRWPS 286
           + G   WER+TW   VQ +PS
Sbjct: 225 RRGVGVWERDTWVESVQSYPS 245


>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +3

Query: 132 TTYRTSVTCRLSTVSLQQKFSTIKAAVKIYKSQALQNGN 248
           T Y+T V    STVS+ Q  + I +A  IYK     +GN
Sbjct: 380 TNYKTLVVIIRSTVSMNQNLNAISSA--IYKELTSNDGN 416


>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +3

Query: 132 TTYRTSVTCRLSTVSLQQKFSTIKAAVKIYKSQALQNGN 248
           T Y+T V    STVS+ Q  + I +A  IYK     +GN
Sbjct: 380 TNYKTLVVIIRSTVSMNQNLNAISSA--IYKELTSNDGN 416


>Z99280-3|CAE18018.1|  215|Caenorhabditis elegans Hypothetical
           protein Y57G11B.7 protein.
          Length = 215

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 278 TAVLADTMFLVPILKGLTFVYFDSGFN 198
           T ++  TMFL P+  G T VYF  G++
Sbjct: 187 TLIICATMFLHPLSMGSTNVYFVPGYH 213


>Z83317-3|CAB05897.1|  217|Caenorhabditis elegans Hypothetical
           protein F13G11.2 protein.
          Length = 217

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 278 TAVLADTMFLVPILKGLTFVYFDSGFN 198
           T ++  TMFL P+  G T VYF  G++
Sbjct: 189 TLIICATMFLHPLSMGSTNVYFVPGYH 215


>U40416-1|AAA81410.2|  822|Caenorhabditis elegans Protein kinase
           protein 29 protein.
          Length = 822

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -3

Query: 177 TKRSKDDMLRTFYTLL--ISVIDHRKHFGKYSQQPFLQAHEMLY 52
           T RS DD +R+    L    VID  K      + PF ++HEM+Y
Sbjct: 715 TTRSIDDRVRSIVCTLPFTEVIDELKASLNILKIPFSESHEMVY 758


>AF403714-1|AAK97497.1|  822|Caenorhabditis elegans serine/threonine
           kinase KIN-29 protein.
          Length = 822

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -3

Query: 177 TKRSKDDMLRTFYTLL--ISVIDHRKHFGKYSQQPFLQAHEMLY 52
           T RS DD +R+    L    VID  K      + PF ++HEM+Y
Sbjct: 715 TTRSIDDRVRSIVCTLPFTEVIDELKASLNILKIPFSESHEMVY 758


>AF024502-7|AAB70377.3|  352|Caenorhabditis elegans Hypothetical
           protein M151.6 protein.
          Length = 352

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/45 (28%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
 Frame = -1

Query: 320 QYSTFYKV*GEGRATAVLADTMFLVP--ILKGLTFVYFDSGFNCA 192
           QYS F+ V  +   +++L++T+F +P  +L+ ++F +F +   C+
Sbjct: 16  QYSLFHIVMPKYNHSSLLSETLFSLPPNLLEDVSFAFFLNRHGCS 60


>Z69902-1|CAA93767.1|  689|Caenorhabditis elegans Hypothetical
           protein C47D12.2 protein.
          Length = 689

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -3

Query: 135 LLISVIDHRKHFGKYSQQPFLQAHEMLYFLSAILSH 28
           L+ +++ HR  F  Y Q P  Q  ++L  ++A++SH
Sbjct: 574 LIYNLLYHRALFDAYVQHPMFQ--DLLVNIAAVISH 607


>U58758-14|AAB93433.2|  842|Caenorhabditis elegans High incidence of
           males (increasedx chromosome loss) protein 14 protein.
          Length = 842

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/39 (28%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +3

Query: 183 QKFSTIKAAVKIYKSQ--ALQNGNEKHGIRKYSGGPPLT 293
           ++++T+K  + ++++    +QNGNE+ G  K  G   +T
Sbjct: 89  REYTTLKTMINVHEAFDIVIQNGNEERGSTKLLGEALMT 127


>AF178755-1|AAD52669.1|  842|Caenorhabditis elegans HIM-14 protein
           protein.
          Length = 842

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/39 (28%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +3

Query: 183 QKFSTIKAAVKIYKSQ--ALQNGNEKHGIRKYSGGPPLT 293
           ++++T+K  + ++++    +QNGNE+ G  K  G   +T
Sbjct: 89  REYTTLKTMINVHEAFDIVIQNGNEERGSTKLLGEALMT 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,847,045
Number of Sequences: 27780
Number of extensions: 141405
Number of successful extensions: 466
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)