Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0813
(341 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g41280.1 68418.m05017 hypothetical protein contains Pfam prof... 29 1.1
At1g15400.2 68414.m01845 expressed protein ESTs gb|H37295 and gb... 27 3.3
At1g15400.1 68414.m01844 expressed protein ESTs gb|H37295 and gb... 27 3.3
At5g48120.1 68418.m05944 expressed protein low similarity to MMS... 27 4.3
At5g47590.1 68418.m05874 heat shock protein-related contains sim... 26 5.7
At5g10620.1 68418.m01229 expressed protein contains Pfam profile... 26 5.7
At1g03080.1 68414.m00282 kinase interacting family protein simil... 26 7.6
At5g48800.1 68418.m06038 phototropic-responsive NPH3 family prot... 25 10.0
At2g32400.1 68415.m03959 glutamate receptor family protein (GLR3... 25 10.0
>At5g41280.1 68418.m05017 hypothetical protein contains Pfam
profile: PF01657 domain of unknown function
Length = 286
Score = 28.7 bits (61), Expect = 1.1
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 51 NKAFRELEEMAAANIFRSAFGGLLRRSTTYRTSVTCRLSTVSLQQKFS 194
N+A E + F + G R+TTY T++ LST+S Q F+
Sbjct: 18 NQAISESDSDEHMATFCNDSSGNFTRNTTYNTNLNTLLSTLSNQSSFA 65
>At1g15400.2 68414.m01845 expressed protein ESTs gb|H37295 and
gb|R64895 come from this gene
Length = 140
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 166 RPFRCSKSSAQLKPLSKYTKVRPFRMG 246
+P S+SS Q+KP+ + K+RP + G
Sbjct: 46 QPKPMSESSEQVKPIDEKDKLRPIKTG 72
>At1g15400.1 68414.m01844 expressed protein ESTs gb|H37295 and
gb|R64895 come from this gene
Length = 145
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 166 RPFRCSKSSAQLKPLSKYTKVRPFRMG 246
+P S+SS Q+KP+ + K+RP + G
Sbjct: 46 QPKPMSESSEQVKPIDEKDKLRPIKTG 72
>At5g48120.1 68418.m05944 expressed protein low similarity to MMS19
[Mus musculus] GI:14029390
Length = 1152
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 192 STIKAAVKIYKSQALQNGNEKHGIRKYSGGPPLTLDLIKSRVLLVL 329
+T+ K +QNGN R Y GG L ++L+ + L+L
Sbjct: 425 NTLGIVEKTSTGDVVQNGNSTVSTRLYHGGLHLCIELLAASKDLIL 470
>At5g47590.1 68418.m05874 heat shock protein-related contains
similarity to mitochondrial small heat shock protein
[Lycopersicon esculentum] gi|3492854|dbj|BAA32547
Length = 264
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 174 SLQQKFSTIKAAVKIYKSQALQNGNEKHGIRKYSGGPPLTLD 299
+++ + ++ V + + L NG E G+R+YSG L D
Sbjct: 60 AVRYRVDAVRQKVVFFSGETLNNGKE--GVRQYSGTAGLGCD 99
>At5g10620.1 68418.m01229 expressed protein contains Pfam profile
PF02590: Uncharacterized ACR, COG1576
Length = 193
Score = 26.2 bits (55), Expect = 5.7
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +3
Query: 141 RTSVTCRLSTVSLQQKFSTIKAAVKIYKSQALQNGNEKH 257
R +VT RLS++ L + + + ++Y+S + G H
Sbjct: 154 RANVTIRLSSMVLNHQIALVVLMEQLYRSWTILKGQNYH 192
>At1g03080.1 68414.m00282 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 1744
Score = 25.8 bits (54), Expect = 7.6
Identities = 18/87 (20%), Positives = 36/87 (41%)
Frame = +3
Query: 3 LATQAFGFDERELLKENKAFRELEEMAAANIFRSAFGGLLRRSTTYRTSVTCRLSTVSLQ 182
L ++FG +EL +EN +E+ E + + L + ++ S L
Sbjct: 626 LHPESFGSSVKELQEENSKLKEIRERESIE-KTALIEKLEMMEKLVQKNLLLENSISDLN 684
Query: 183 QKFSTIKAAVKIYKSQALQNGNEKHGI 263
+ TI+ +K + ++ EK G+
Sbjct: 685 AELETIRGKLKTLEEASMSLAEEKSGL 711
>At5g48800.1 68418.m06038 phototropic-responsive NPH3 family protein
contains NPH3 family domain, Pfam:PF03000
Length = 614
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 114 GLLRRSTTYRTSVTCRL 164
GLLRR+ TSV+CRL
Sbjct: 294 GLLRRAVILDTSVSCRL 310
>At2g32400.1 68415.m03959 glutamate receptor family protein (GLR3.7)
(GLR5) identical to Glr5 [Arabidopsis thaliana]
gi|6644388|gb|AAF21042; plant glutamate receptor family,
PMID:11379626
Length = 921
Score = 25.4 bits (53), Expect = 10.0
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 27 DERELLKENKAFRELEEMAAANIFRSAFG 113
+++ LKE + R L E +A N+FR +FG
Sbjct: 60 NDKSFLKETE-LRLLMEDSACNVFRGSFG 87
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,280,011
Number of Sequences: 28952
Number of extensions: 127174
Number of successful extensions: 392
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 409426656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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