Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0810
(450 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 116 1e-27
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 60 2e-10
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 56 2e-09
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 53 2e-08
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 53 2e-08
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 52 5e-08
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 50 2e-07
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 47 1e-06
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 46 2e-06
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 46 3e-06
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 46 4e-06
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 46 4e-06
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 44 1e-05
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 42 3e-05
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 42 6e-05
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 42 6e-05
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 41 1e-04
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 40 1e-04
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 40 1e-04
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 40 2e-04
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 39 3e-04
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 39 4e-04
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 36 0.002
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 36 0.003
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 36 0.004
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 35 0.007
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 34 0.009
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 33 0.015
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 33 0.027
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 32 0.035
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 32 0.047
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 31 0.062
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 30 0.14
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 29 0.44
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch... 29 0.44
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 27 1.0
SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 27 1.3
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 26 2.3
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 26 3.1
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 26 3.1
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 25 4.1
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo... 24 9.4
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 24 9.4
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac... 24 9.4
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git... 24 9.4
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 116 bits (280), Expect = 1e-27
Identities = 59/147 (40%), Positives = 91/147 (61%), Gaps = 6/147 (4%)
Frame = +3
Query: 27 NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAE-APGRDDDRKLFVGGLSWETTDKELRD 203
+ +N D +NQ + +G +S + N+ E +P +D K+F+GGL+WETTD LRD
Sbjct: 123 DGENSKNDNYNENQ-SALTGSGAMESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRD 181
Query: 204 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 383
+F +GE+ V D TGRSRGF F+ FK P+ +++VM+ EH ++ K +DPK+A R
Sbjct: 182 YFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK-EHHLDGKIIDPKRAIPR 240
Query: 384 H-----GKIFVGGLSSEISDDEIRNFF 449
K+FVGG+ + +++E RNFF
Sbjct: 241 EEQEKTAKMFVGGVPGDCTEEEFRNFF 267
Score = 59.7 bits (138), Expect = 2e-10
Identities = 25/75 (33%), Positives = 45/75 (60%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 329
K+FVGG+ + T++E R+ F +G + + D +TGR RGF F+ ++ +++ M+
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQ 307
Query: 330 GEHTINNKKVDPKKA 374
TI+ K V+ K+A
Sbjct: 308 PYITIHGKPVEVKRA 322
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 60.1 bits (139), Expect = 2e-10
Identities = 28/97 (28%), Positives = 50/97 (51%)
Frame = +3
Query: 51 ITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIE 230
I ++ +G S ++ ++ LFVG L +ETTD +L++HFG G+I
Sbjct: 196 IKSNTDFSGRPSKPANTLSKTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIR 255
Query: 231 SINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT 341
+ + T +TG+ +GF F+ F ++ K M G ++
Sbjct: 256 RVRLMTFEDTGKCKGFGFVDFPDIDTCMKAMELGHNS 292
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 56.4 bits (130), Expect = 2e-09
Identities = 25/64 (39%), Positives = 38/64 (59%)
Frame = +3
Query: 153 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 332
+FVG LS+ T+ +L FG G+I+SI + TDP +GR +GF ++ F +S K +
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMN 427
Query: 333 EHTI 344
H I
Sbjct: 428 GHFI 431
Score = 52.0 bits (119), Expect = 4e-08
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Frame = +3
Query: 129 PGRDDDRK--LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 302
P +D + +FVG LSW D+ L F YG I V D +GRS+G+ ++ F+ P
Sbjct: 255 PSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETP 314
Query: 303 ESIDKVMAA-GEHTINNKKVD 362
E+ +AA G I+ + V+
Sbjct: 315 EAAKAAVAANGTKEIDGRMVN 335
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 53.2 bits (122), Expect = 2e-08
Identities = 24/67 (35%), Positives = 38/67 (56%)
Frame = +3
Query: 135 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 314
+D R +FVG L++E ++ L +FG G I+ + + DP T +GFA+I FK +D
Sbjct: 266 QDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVD 325
Query: 315 KVMAAGE 335
K + E
Sbjct: 326 KALLLNE 332
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 52.8 bits (121), Expect = 2e-08
Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 5/97 (5%)
Frame = +3
Query: 117 SAEAPGRDDDRK--LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIV 290
S G+++DRK LFVG L +++ + L+ HF G++ S+ + TD +GR +G+AF+
Sbjct: 80 SKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVE 139
Query: 291 FKAPES--IDKVMAAGEHTI-NNKKVDPKKAKARHGK 392
F P++ I K + HTI +K++ + GK
Sbjct: 140 FINPKTDVISKALKF-HHTIYKERKINIELTAGGGGK 175
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 51.6 bits (118), Expect = 5e-08
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Frame = +3
Query: 141 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 320
D + ++VG + + T +EL+ HF + G + + + D TG +GFA+I F P +
Sbjct: 53 DAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNA 112
Query: 321 MAAGEHTINNK--KVDPKK 371
+ ++ + KV PK+
Sbjct: 113 LLLNGSMLHERPLKVTPKR 131
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 49.6 bits (113), Expect = 2e-07
Identities = 23/53 (43%), Positives = 34/53 (64%)
Frame = +3
Query: 135 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 293
RDD L V LS +T ++ELRD F +G I+ + + D TGR++GFAF+ +
Sbjct: 198 RDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 47.2 bits (107), Expect = 1e-06
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Frame = +3
Query: 78 NAENGGGDSQDHNSAEAPGRDDDR---KLFVGGLSWETTDKELRDHFGAYGEIESINVKT 248
+ E+ G S D NS RD++ +FV L +E T++EL +HF +G + +
Sbjct: 251 DVEDSGDSSSDKNSINHEIRDNEGLEDTVFVRNLLFECTEQELYNHFRQFGPLAYAKLVK 310
Query: 249 DPNTGRSRGFAFIVFK 296
DP T RS G FI F+
Sbjct: 311 DPATDRSLGRGFIKFR 326
Score = 44.0 bits (99), Expect = 1e-05
Identities = 26/69 (37%), Positives = 38/69 (55%)
Frame = +3
Query: 153 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 332
LFV L+++T +L + F G I+ V T+P TG +RG+ F+ F E D AA
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLE--DAQRAAK 64
Query: 333 EHTINNKKV 359
E + NKK+
Sbjct: 65 E--LKNKKL 71
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 46.4 bits (105), Expect = 2e-06
Identities = 21/57 (36%), Positives = 32/57 (56%)
Frame = +3
Query: 153 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 323
LF+ L E D+ L+ F A+G I S + TD G+S+GF F+ + PE +K +
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAV 421
Score = 39.9 bits (89), Expect = 2e-04
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 8/107 (7%)
Frame = +3
Query: 153 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 332
L+VG L T+ L + F + G + SI V D T RS G+A++ F E +K +
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 333 EHTINN--------KKVDPKKAKARHGKIFVGGLSSEISDDEIRNFF 449
+T+ + DP K G +F+ L I + + + F
Sbjct: 142 NYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTF 188
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 46.0 bits (104), Expect = 3e-06
Identities = 20/53 (37%), Positives = 33/53 (62%)
Frame = +3
Query: 138 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 296
D + +F+ LS++T + ++ F YG IE I V + TG+S G+AF+VF+
Sbjct: 97 DPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFE 149
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 45.6 bits (103), Expect = 4e-06
Identities = 22/82 (26%), Positives = 41/82 (50%)
Frame = +3
Query: 60 DNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESIN 239
+++++ N E+ D ++ SA + LFV G++ + EL+ F +G + +
Sbjct: 72 EDEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVR 131
Query: 240 VKTDPNTGRSRGFAFIVFKAPE 305
+ +P T SRGF F+ F E
Sbjct: 132 IMREPVTKASRGFGFLSFSTVE 153
Score = 25.0 bits (52), Expect = 5.4
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +3
Query: 312 DKVMAAGEHTINNKKVD---PKKAKARHGKIFVGGLSSEISDDEIRNFF 449
D+V E T +KK P+ ++ +FV G++S + +DE++ F
Sbjct: 73 DEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIF 121
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 45.6 bits (103), Expect = 4e-06
Identities = 28/100 (28%), Positives = 47/100 (47%)
Frame = +3
Query: 84 ENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 263
E G G ++ P + VG LS++ T+ +L D FG + SI + DP T
Sbjct: 74 EGGMGSGYQRDAIPIPS-EPPFTAHVGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTE 130
Query: 264 RSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 383
RSRGF ++ F+ +++ +A + + V A+ R
Sbjct: 131 RSRGFGYVEFETADTLSAALALSGEDLMGRPVRITVAEPR 170
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 43.6 bits (98), Expect = 1e-05
Identities = 23/68 (33%), Positives = 38/68 (55%)
Frame = +3
Query: 108 DHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFI 287
D+N + G + ++FV +S T ++LR HF ++GE+ +++K +P TG S G I
Sbjct: 82 DYNE-NSLGPEPPTQVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCI 140
Query: 288 VFKAPESI 311
F SI
Sbjct: 141 SFDKRSSI 148
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 42.3 bits (95), Expect = 3e-05
Identities = 18/75 (24%), Positives = 40/75 (53%)
Frame = +3
Query: 153 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 332
+FVG + ++ +++++ + F G +++ + DP TG +G+ F F E+ A
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSET----TAMA 64
Query: 333 EHTINNKKVDPKKAK 377
+NN ++ P+K +
Sbjct: 65 VRKLNNSELGPRKIR 79
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 41.5 bits (93), Expect = 6e-05
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = +3
Query: 153 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK----APESIDKV 320
++VG L W T+D+ L D F G + + +P TGRS+GF + F+ A SI+K+
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKL 340
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 41.5 bits (93), Expect = 6e-05
Identities = 17/56 (30%), Positives = 32/56 (57%)
Frame = +3
Query: 141 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 308
D +++G L ++ + ++ F +GE IN+ D TG+S+GFAF+ ++ S
Sbjct: 29 DSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRS 84
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 40.7 bits (91), Expect = 1e-04
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Frame = +3
Query: 153 LFVGGLSWETTDKELRDHFGAYGE-IESINVKTDPNTGRSRGFAFIVFKAPESID-KVMA 326
LFVG L ++ L D F A G+ +++ V D N GRS+G+ F+ + + E+ D + A
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDEN-GRSKGYGFVSYDSFETADAAIEA 159
Query: 327 AGEHTINNKKVDPKKAKARHGK 392
+ NK + A R GK
Sbjct: 160 MNNQFLMNKPITVSYAFKREGK 181
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 40.3 bits (90), Expect = 1e-04
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = +3
Query: 141 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 320
D R +FV L+ T +EL D F G + + D +GRS+G A++ F +S+
Sbjct: 238 DRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAA 297
Query: 321 MA 326
+A
Sbjct: 298 IA 299
Score = 36.7 bits (81), Expect = 0.002
Identities = 16/53 (30%), Positives = 34/53 (64%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 308
+L V + + TD++++ F +G+IE ++++ D + RS+GF +I ++ P S
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD-DQNRSKGFGYIQYRNPIS 392
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 40.3 bits (90), Expect = 1e-04
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Frame = +3
Query: 99 DSQDHNSAE---APGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGR 266
D+ H SAE P + DD ++FVG LS T E+R F G + + +
Sbjct: 24 DAAVHASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRG 83
Query: 267 SR----GFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK 371
+R G AF+ F E +DK + T+N K +D ++
Sbjct: 84 TRLVPSGIAFVTFNNQEDVDKAI----ETLNGKTLDDRE 118
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 39.9 bits (89), Expect = 2e-04
Identities = 17/81 (20%), Positives = 43/81 (53%)
Frame = +3
Query: 141 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 320
+ R+L+V + ++ +K++ F YG++ES+ + N + +GF ++V + +
Sbjct: 755 EGRELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFN--QHKGFGYVVMTTNQDAENA 812
Query: 321 MAAGEHTINNKKVDPKKAKAR 383
++A + N+ ++ +K R
Sbjct: 813 LSAAGKQLGNRVLNVVLSKPR 833
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 39.1 bits (87), Expect = 3e-04
Identities = 23/55 (41%), Positives = 31/55 (56%)
Frame = +3
Query: 153 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 317
LFV L+ T D++L F +G+I S V D TG S +AFI F ES++K
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEK 300
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 38.7 bits (86), Expect = 4e-04
Identities = 19/48 (39%), Positives = 31/48 (64%)
Frame = +3
Query: 153 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 296
LF+ LS++ T +E+ D FG YG + I + NT ++RG AF+V++
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRL---GNTVQTRGTAFVVYE 58
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 36.3 bits (80), Expect = 0.002
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +3
Query: 153 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 302
++VG + +E ++++ D F G ++S + DP +G+ +G+ F + P
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDP 56
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 35.9 bits (79), Expect = 0.003
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 296
+LFVG L + D+ L F Y + V D G++RGF F+ FK
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRD-REGKTRGFGFVSFK 78
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 35.5 bits (78), Expect = 0.004
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Frame = +3
Query: 108 DHNSAEAPGR--DDDRKLFVGGLSWETTDKELRDHFGAYGEIESI----------NVKTD 251
+++ PG+ D+ ++VG + +D+E+ HF YG++ESI K
Sbjct: 2 NNSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAK 61
Query: 252 PNTGRSRG--FAFIVFKAPESIDKVMA-AGEHTINNKKVDPKKAKARHGKI 395
P G + F+ F ESI++V+ A T+ +K+ K K+
Sbjct: 62 PFKPPKNGVQYGFVKFVNAESIEEVLKDAKGMTLGQRKLTIKARVVNPAKL 112
Score = 35.1 bits (77), Expect = 0.005
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
Frame = +3
Query: 99 DSQDHNSAEAPGRD-DDRKLFVGGLSWE--TTDKELRDHFGAYGEIESINVKTDPNTGRS 269
DS +S P D L+V L T +L D F +G I S + PN+G S
Sbjct: 365 DSLRESSPSIPNSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGIS 424
Query: 270 RGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK 371
+G+ F+ F+ E+ + T+N V K+
Sbjct: 425 KGYGFVAFRQIEA----AVRAKDTLNGMMVGKKR 454
Score = 27.1 bits (57), Expect = 1.3
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 342 INNKKVD-PKKAKARHGKIFVGGLSSEISDDEIRNFF 449
+NN K+ P + + I+VG + S +SD+EI F
Sbjct: 1 MNNSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHF 37
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 34.7 bits (76), Expect = 0.007
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 153 LFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVF 293
+FVG LS + ++ F + Y +S + TDP T SRG+ F+ F
Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRF 235
Score = 28.7 bits (61), Expect = 0.44
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 363 PKKAKARHGKIFVGGLSSEISDDEIRNFF 449
P+ A + +FVGGLS +S++E++ F
Sbjct: 295 PQFADTANSTVFVGGLSKFVSEEELKYLF 323
Score = 28.7 bits (61), Expect = 0.44
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +3
Query: 153 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 263
+FVGGLS +++EL+ F +GEI + VK P G
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEI--VYVKIPPGKG 339
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 34.3 bits (75), Expect = 0.009
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Frame = +3
Query: 153 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFI-VFKAPESIDKVMAA 329
++VG LS+ TT++++ F GEI I + D T GF F+ F+ +++D +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93
Query: 330 GEHTINNKKVDPKKAKA-RHGKIFVGGLSSEISDDEIRNFF 449
+++ + + G+ + G S DE+R F
Sbjct: 94 SRTSLDERIIRADLDHGYEEGRQYGRGASGGQVRDEMREEF 134
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 33.5 bits (73), Expect = 0.015
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +3
Query: 144 DRKLFVGGLSWETTDKELRDHFGAYGEIESINV--KTDPNTGRSRGFAFIVFKAPE 305
+++++VGGLS +L F +G + ++ + K+ P G + FA++ F+ E
Sbjct: 4 EKRIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTP-VGTIQRFAYLNFRTDE 58
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 32.7 bits (71), Expect = 0.027
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +3
Query: 141 DDRKLFVGGLSWETTDKELRDHF-GAYGEIESINVKTDPNTGRSRGFAFIVFKAP 302
++ K+ V L + T+ ++++ F + G + +++ PN GRS+G A I+F P
Sbjct: 53 EESKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPN-GRSKGIATIIFSRP 106
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 32.3 bits (70), Expect = 0.035
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 147 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPN 257
R +F+G L +KE+ + FG +G+IE I + + N
Sbjct: 299 RNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKN 335
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 31.9 bits (69), Expect = 0.047
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +3
Query: 189 KELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP-ESIDKVMAAGEHTINNKKVDP 365
++L + F +G I+S + + P+T S+G+ F+ F P E++ + K++
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFV 494
Query: 366 KKAKARHGK 392
A+ R +
Sbjct: 495 NYAEKREDR 503
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 31.5 bits (68), Expect = 0.062
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +3
Query: 138 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 317
D K+++ L + ++ + +G++ S + + G S+GF F FK P +
Sbjct: 307 DSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEV 366
Query: 318 VMAA--GEHTINNK 353
++ G+ T NK
Sbjct: 367 AISGLDGKDTYGNK 380
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 30.3 bits (65), Expect = 0.14
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
Frame = +3
Query: 123 EAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 302
E P LF+ G+ E D ++R HF YG ++S+ + R++ AF+ FK
Sbjct: 204 EPPKDKKIASLFLIGVEDELADYKIRKHFEQYGPLKSVVC-----SHRAK-CAFVNFKTR 257
Query: 303 ESIDKVMAAGEHTINNKKVDPKKAKARHGK-IFVGGLSSEISDDEI 437
S + +AA N ++ + K + GK +GG E+ + ++
Sbjct: 258 SSAE--IAAAASPDGNVVIEGFRLKVQWGKPRSLGGPEGEVRNAKL 301
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 28.7 bits (61), Expect = 0.44
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 147 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPN 257
R +F+G L T+ E+R+ +G I+ I + T+ N
Sbjct: 206 RNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERN 242
Score = 28.3 bits (60), Expect = 0.58
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +3
Query: 114 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPN 257
N A A R +++G T + L++ F +GEIE +N + N
Sbjct: 403 NIALAVAGGASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKN 450
>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
45|Schizosaccharomyces pombe|chr 1|||Manual
Length = 558
Score = 28.7 bits (61), Expect = 0.44
Identities = 15/72 (20%), Positives = 32/72 (44%)
Frame = +3
Query: 198 RDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAK 377
R++ GE+E V +P + ++F K+ A +++ +++DP K
Sbjct: 344 RENLLEVGEVEQSLVCNEPQSTDFNDIQRLLFSNISENTKLRLAALYSLRFERIDPAKVS 403
Query: 378 ARHGKIFVGGLS 413
A + GG++
Sbjct: 404 ALQQMLIAGGVN 415
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 27.5 bits (58), Expect = 1.0
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 270 RGFAFIVFKAPESIDKVMAAGEHTINNKK 356
RGFA IVF A S ++V G H +N+ K
Sbjct: 187 RGFAEIVFCAIASNEQVRGYGSHLMNHLK 215
>SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 289
Score = 27.1 bits (57), Expect = 1.3
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 160 TKSFLSSSRPGASALL*SCESPPPFSAFPLSWLSVVIS 47
T SFL + R +L C S P +AF W+ ++ S
Sbjct: 205 TSSFLETQRSYRIYMLIDCPSNPKATAFARYWMHLICS 242
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 26.2 bits (55), Expect = 2.3
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 144 DRKLFVGGLSWETTDKELRDHFGAYGEI 227
+ +LFVG + + T +++ D F YG+I
Sbjct: 3 ETRLFVGRIPPQATREDMMDFFKGYGQI 30
>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 3.1
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -2
Query: 377 FSLLWVYFLVVDGVFTSSHDLVY*LWGLKHNEGKPS*SACVWICLYINTLYFTV 216
F+LL L + GV Y ++ + H+ G P WICL+ +F +
Sbjct: 85 FALLSSQPLCIVGVTGPITVFNYTVYDIMHDRGTPYFPFLCWICLWSMIFHFII 138
>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 471
Score = 25.8 bits (54), Expect = 3.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 6 GVILVMANNDNFAQDITTDNQLNGNAEN 89
G+IL N D FA + ++N L G N
Sbjct: 101 GIILGKTNMDEFAMGVKSENNLFGRTVN 128
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.4 bits (53), Expect = 4.1
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = -2
Query: 413 AESSDKNLPMSCFSLLWVYFLVVDGVFTSSHDLVY*LWGLKHNEGKPS*SACVWICLYIN 234
++ L M C +++ F +F S ++V +GLK++ SA V I + N
Sbjct: 1191 SDEETTQLAMDCLAVMAKRFSASPELFISPIEVVSGPYGLKNSARDVQVSAIVCITVLTN 1250
Query: 233 TL 228
TL
Sbjct: 1251 TL 1252
>SPAC630.05 |gyp7||GTPase activating protein Gyp7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 24.2 bits (50), Expect = 9.4
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -3
Query: 370 FFGSTFLLLMVCSPAAMTLSIDSGALNTMKANPRDLPVFGSV 245
F+G T LL+ + A++ S L + +P D F SV
Sbjct: 187 FWGGTHLLMQLKKYASLEQSSHESQLYLVNPSPEDTVAFQSV 228
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 24.2 bits (50), Expect = 9.4
Identities = 27/121 (22%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Frame = +3
Query: 60 DNQLNGNAENGGGDSQDHNSAEAPGRDDD-RKLFVGGLSWETTDKELRDHFGAYGEIESI 236
D Q NG A S+ +N + PG D+ + G+ E+ D+E+ ++ + ++ +
Sbjct: 48 DEQSNGQAPFSTTYSEINNIHDVPGNQDEWSSSPIAGIIVESEDEEVVEN-NLHSQMGTS 106
Query: 237 NVKTDPNTGRSR-GFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLS 413
K + N+ + + F++ +S K A+ + + K+D + + +GK F LS
Sbjct: 107 CNKINSNSNKGKENMHFVLDDNGDS--KGNASNQQVERDDKLDMETTR-WNGKEFEEPLS 163
Query: 414 S 416
+
Sbjct: 164 T 164
>SPBC1539.09c |trp1||anthranilate synthase component
II|Schizosaccharomyces pombe|chr 2|||Manual
Length = 759
Score = 24.2 bits (50), Expect = 9.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 294 KAPESIDKVMAAGEHTINNKKVDPKKA 374
K S+ K ++ HT N K + PKKA
Sbjct: 570 KVDLSVAKEISHFVHTTNRKHISPKKA 596
>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
Git5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 305
Score = 24.2 bits (50), Expect = 9.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 376 LAFFGSTFLLLMVCSPAAMTLSIDSGALN 290
+AFF + + +M C+ + T SI +G LN
Sbjct: 56 VAFFEAPSVWIMTCAFSPSTKSIAAGGLN 84
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,910,573
Number of Sequences: 5004
Number of extensions: 39835
Number of successful extensions: 172
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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