Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0810
(450 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 87 4e-18
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 87 7e-18
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 86 9e-18
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 86 1e-17
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 86 1e-17
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 80 8e-16
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 80 8e-16
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 80 8e-16
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 80 8e-16
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 79 1e-15
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 79 1e-15
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 78 3e-15
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 77 7e-15
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 77 7e-15
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 70 8e-13
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 70 8e-13
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 69 2e-12
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 68 3e-12
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 66 1e-11
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 66 1e-11
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 65 2e-11
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 64 4e-11
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 64 4e-11
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 63 1e-10
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 63 1e-10
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 63 1e-10
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 62 2e-10
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 62 2e-10
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 62 2e-10
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 61 4e-10
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 61 4e-10
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 61 4e-10
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 61 4e-10
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 60 5e-10
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 60 5e-10
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 60 9e-10
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 60 9e-10
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 59 1e-09
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 59 1e-09
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 59 1e-09
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 59 2e-09
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 58 3e-09
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 58 3e-09
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 58 3e-09
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 57 5e-09
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 57 6e-09
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 56 8e-09
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 56 8e-09
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 56 8e-09
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 56 1e-08
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 55 2e-08
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 55 2e-08
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 55 2e-08
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 55 3e-08
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 55 3e-08
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 54 4e-08
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 54 4e-08
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 54 4e-08
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 54 4e-08
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 54 4e-08
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 54 4e-08
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 54 6e-08
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 53 1e-07
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 53 1e-07
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 53 1e-07
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 53 1e-07
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 52 1e-07
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 52 2e-07
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 52 2e-07
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 52 2e-07
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 52 2e-07
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 51 3e-07
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 50 5e-07
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 50 7e-07
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 50 7e-07
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 50 7e-07
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 50 7e-07
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 50 1e-06
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 50 1e-06
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 50 1e-06
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 43 1e-06
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 49 1e-06
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 49 2e-06
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 48 2e-06
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 48 2e-06
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 48 3e-06
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 48 3e-06
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 48 4e-06
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 48 4e-06
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 48 4e-06
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 48 4e-06
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 48 4e-06
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 47 5e-06
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 47 5e-06
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 47 5e-06
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 47 5e-06
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ... 47 7e-06
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ... 47 7e-06
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 47 7e-06
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 47 7e-06
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 47 7e-06
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 46 9e-06
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 46 9e-06
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 46 9e-06
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 46 9e-06
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 46 9e-06
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 46 9e-06
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 46 1e-05
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 46 1e-05
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 46 1e-05
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 46 1e-05
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 46 1e-05
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 46 2e-05
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 46 2e-05
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 46 2e-05
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 45 2e-05
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 45 2e-05
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 45 2e-05
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 45 3e-05
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 45 3e-05
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 45 3e-05
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 44 4e-05
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 44 4e-05
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 44 4e-05
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 44 4e-05
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 44 4e-05
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 44 5e-05
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 44 6e-05
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 44 6e-05
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 43 1e-04
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 42 1e-04
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 42 1e-04
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 42 1e-04
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 42 1e-04
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 42 1e-04
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 42 1e-04
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 42 2e-04
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 42 2e-04
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 42 2e-04
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 42 2e-04
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 42 3e-04
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 42 3e-04
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 41 4e-04
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 40 6e-04
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 40 6e-04
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 40 8e-04
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 40 8e-04
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 40 0.001
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 40 0.001
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 40 0.001
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 40 0.001
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 39 0.001
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 39 0.001
At2g47310.1 68415.m05906 flowering time control protein-related ... 39 0.001
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 39 0.002
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 38 0.002
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 38 0.002
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 38 0.002
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 38 0.004
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 38 0.004
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 38 0.004
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 38 0.004
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 37 0.005
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 37 0.005
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 37 0.005
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 36 0.010
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 36 0.010
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 36 0.010
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 36 0.010
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 36 0.013
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 36 0.013
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 35 0.022
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 35 0.022
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 35 0.022
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 35 0.022
At5g51300.2 68418.m06360 splicing factor-related contains simila... 35 0.029
At5g51300.1 68418.m06359 splicing factor-related contains simila... 35 0.029
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 35 0.029
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 35 0.029
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 35 0.029
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 35 0.029
At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing ... 34 0.039
At1g72800.1 68414.m08416 nuM1-related contains similarity with n... 34 0.039
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 34 0.039
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 34 0.039
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 34 0.051
At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ... 34 0.051
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 33 0.089
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 33 0.089
At2g42240.1 68415.m05228 RNA recognition motif (RRM)-containing ... 33 0.089
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 33 0.12
At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing ... 33 0.12
At5g16840.1 68418.m01973 RNA recognition motif (RRM)-containing ... 32 0.16
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 32 0.16
At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein ... 32 0.21
At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein ... 32 0.21
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 32 0.21
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 32 0.21
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 32 0.21
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 31 0.27
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 31 0.27
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 31 0.27
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 31 0.27
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 31 0.36
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 31 0.48
At5g04210.1 68418.m00409 RNA recognition motif (RRM)-containing ... 30 0.63
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 30 0.63
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar... 30 0.83
At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70 (... 29 1.1
At3g18810.1 68416.m02389 protein kinase family protein contains ... 29 1.1
At1g73490.1 68414.m08508 RNA recognition motif (RRM)-containing ... 29 1.1
At2g47390.1 68415.m05915 expressed protein 29 1.5
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 29 1.9
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 29 1.9
At5g03480.1 68418.m00304 expressed protein ; expression support... 28 2.5
At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing ... 28 2.5
At5g22830.1 68418.m02669 magnesium transporter CorA-like family ... 28 3.4
At4g24420.1 68417.m03501 RNA recognition motif (RRM)-containing ... 28 3.4
At4g17720.1 68417.m02646 RNA recognition motif (RRM)-containing ... 27 4.4
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 27 4.4
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 27 4.4
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 27 4.4
At5g49760.1 68418.m06163 leucine-rich repeat family protein / pr... 27 5.9
At5g03740.1 68418.m00335 zinc finger (C2H2 type) family protein ... 27 5.9
At1g09810.1 68414.m01101 expressed protein contains Pfam profile... 27 5.9
At5g18280.1 68418.m02149 apyrase (APY2) identical to apyrase GI:... 27 7.7
At5g09970.1 68418.m01152 cytochrome P450 family protein 27 7.7
At1g79100.1 68414.m09223 arginine/serine-rich protein-related si... 27 7.7
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 87.4 bits (207), Expect = 4e-18
Identities = 55/149 (36%), Positives = 81/149 (54%), Gaps = 17/149 (11%)
Frame = +3
Query: 54 TTDNQLNGNA--ENGG---GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAY 218
T D++ NG A + GG S DH + + KLFVGG+SWETT + ++FG +
Sbjct: 31 TFDDRRNGGAAVDTGGIQMKHSVDHRHSSS-SMSSPGKLFVGGVSWETTAETFANYFGKF 89
Query: 219 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPK---------- 368
GE+ + TD TG RGF F+ F +KV+ +H I+++KVD K
Sbjct: 90 GEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE-DHVIDDRKVDLKRTLPRGDKDT 148
Query: 369 --KAKARHGKIFVGGLSSEISDDEIRNFF 449
KA ++ KIFVGGL + +DE++N+F
Sbjct: 149 DIKAVSKTRKIFVGGLPPLLEEDELKNYF 177
Score = 68.9 bits (161), Expect = 1e-12
Identities = 31/80 (38%), Positives = 54/80 (67%), Gaps = 1/80 (1%)
Frame = +3
Query: 147 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 326
RK+FVGGL + EL+++F YG+I + D +TGRSRGF F+ F+ +S+D++ +
Sbjct: 157 RKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFS 216
Query: 327 AGE-HTINNKKVDPKKAKAR 383
G+ H + +K+V+ K+A+ +
Sbjct: 217 DGKVHELGDKQVEIKRAEPK 236
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 86.6 bits (205), Expect = 7e-18
Identities = 53/144 (36%), Positives = 73/144 (50%), Gaps = 9/144 (6%)
Frame = +3
Query: 45 QDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGE 224
+D D + + + E+ SQ H+ G D K+FVGGL+ ETT E HFG YGE
Sbjct: 11 EDEIHDPKPSEDIEDDDDKSQPHSGG---GVDSAGKIFVGGLARETTSAEFLKHFGKYGE 67
Query: 225 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHG----- 389
I + D TG+ RGF F+ + +DKV+ H I K+V+ K+ R
Sbjct: 68 ITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVI-QDNHIIIGKQVEIKRTIPRGSMSSND 126
Query: 390 ----KIFVGGLSSEISDDEIRNFF 449
KIFVGG+ S + DDE + FF
Sbjct: 127 FKTKKIFVGGIPSSVDDDEFKEFF 150
Score = 62.1 bits (144), Expect = 2e-10
Identities = 26/80 (32%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Frame = +3
Query: 147 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 326
+K+FVGG+ D E ++ F +GE++ + D +TGRSRGF F+ +++ + +D ++A
Sbjct: 130 KKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLA 189
Query: 327 AGEH-TINNKKVDPKKAKAR 383
G ++ +V+ KKA+ +
Sbjct: 190 KGNRIELSGTQVEIKKAEPK 209
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 86.2 bits (204), Expect = 9e-18
Identities = 49/128 (38%), Positives = 70/128 (54%), Gaps = 25/128 (19%)
Frame = +3
Query: 141 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 320
D KLFVGG+SWET + +LR+HF YGE+ V D TGR RGF F++F P +D+V
Sbjct: 4 DQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRV 63
Query: 321 MAAGEHTINNKKVDPKKAKARH-------------------------GKIFVGGLSSEIS 425
+ +H+I+ ++VD K+A +R KIFVGGL ++
Sbjct: 64 LQE-KHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLT 122
Query: 426 DDEIRNFF 449
D+E R +F
Sbjct: 123 DEEFRQYF 130
Score = 68.5 bits (160), Expect = 2e-12
Identities = 35/126 (27%), Positives = 65/126 (51%), Gaps = 3/126 (2%)
Frame = +3
Query: 45 QDITTDNQLNGNAENGGGDSQDHNSAEAPGRD---DDRKLFVGGLSWETTDKELRDHFGA 215
+++ ++ + G + + N++ + G D +K+FVGGL TD+E R +F
Sbjct: 73 REVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEV 132
Query: 216 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKI 395
YG + + + D T R RGF F+ F + +++D V+ H ++ K+V+ K+A +
Sbjct: 133 YGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKDANP 192
Query: 396 FVGGLS 413
GG S
Sbjct: 193 GGGGRS 198
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 85.8 bits (203), Expect = 1e-17
Identities = 50/130 (38%), Positives = 71/130 (54%), Gaps = 11/130 (8%)
Frame = +3
Query: 93 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 272
G S++ N G K+F+GGL +TT+ HFG YGEI + D +TG+ R
Sbjct: 2 GSRSRNDNFQSGDGASPG-KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPR 60
Query: 273 GFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA--KARHG---------KIFVGGLSSE 419
GF FI F P +DKV+ H IN K+V+ K+ K G KIFVGG+ S
Sbjct: 61 GFGFITFADPSVVDKVI-EDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPST 119
Query: 420 ISDDEIRNFF 449
+++DE+++FF
Sbjct: 120 VTEDELKDFF 129
Score = 64.1 bits (149), Expect = 4e-11
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 6/85 (7%)
Frame = +3
Query: 147 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 326
+K+FVGG+ T+ EL+D F YG + V D T RSRGF F++F + E +D++++
Sbjct: 109 KKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLS 168
Query: 327 AG------EHTINNKKVDPKKAKAR 383
G + + KK +PKK+ R
Sbjct: 169 KGNMIDMADTQVEIKKAEPKKSLNR 193
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 85.8 bits (203), Expect = 1e-17
Identities = 50/130 (38%), Positives = 71/130 (54%), Gaps = 11/130 (8%)
Frame = +3
Query: 93 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 272
G S++ N G K+F+GGL +TT+ HFG YGEI + D +TG+ R
Sbjct: 2 GSRSRNDNFQSGDGASPG-KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPR 60
Query: 273 GFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA--KARHG---------KIFVGGLSSE 419
GF FI F P +DKV+ H IN K+V+ K+ K G KIFVGG+ S
Sbjct: 61 GFGFITFADPSVVDKVI-EDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPST 119
Query: 420 ISDDEIRNFF 449
+++DE+++FF
Sbjct: 120 VTEDELKDFF 129
Score = 60.5 bits (140), Expect = 5e-10
Identities = 25/62 (40%), Positives = 39/62 (62%)
Frame = +3
Query: 147 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 326
+K+FVGG+ T+ EL+D F YG + V D T RSRGF F++F + E +D++++
Sbjct: 109 KKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLS 168
Query: 327 AG 332
G
Sbjct: 169 KG 170
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 79.8 bits (188), Expect = 8e-16
Identities = 48/125 (38%), Positives = 70/125 (56%), Gaps = 25/125 (20%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 329
KLF+GG+SW+T ++ LRD+F YG++ + D TGR+RGF FIVF P ++V+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-M 65
Query: 330 GEHTINNKKVDPKKAKAR-------------------HG------KIFVGGLSSEISDDE 434
+H I+ + V+ KKA R HG KIFVGGL S I+++E
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 435 IRNFF 449
+N+F
Sbjct: 126 FKNYF 130
Score = 67.7 bits (158), Expect = 3e-12
Identities = 30/76 (39%), Positives = 48/76 (63%)
Frame = +3
Query: 147 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 326
+K+FVGGL T++E +++F +G I + V D NT R RGF FI F + +++D+V+
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLH 169
Query: 327 AGEHTINNKKVDPKKA 374
H +N K V+ K+A
Sbjct: 170 KTFHELNGKLVEVKRA 185
Score = 27.9 bits (59), Expect = 3.4
Identities = 8/21 (38%), Positives = 17/21 (80%)
Frame = +3
Query: 387 GKIFVGGLSSEISDDEIRNFF 449
GK+F+GG+S + ++ +R++F
Sbjct: 6 GKLFIGGISWDTDEERLRDYF 26
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 79.8 bits (188), Expect = 8e-16
Identities = 48/125 (38%), Positives = 70/125 (56%), Gaps = 25/125 (20%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 329
KLF+GG+SW+T ++ LRD+F YG++ + D TGR+RGF FIVF P ++V+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-M 65
Query: 330 GEHTINNKKVDPKKAKAR-------------------HG------KIFVGGLSSEISDDE 434
+H I+ + V+ KKA R HG KIFVGGL S I+++E
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 435 IRNFF 449
+N+F
Sbjct: 126 FKNYF 130
Score = 67.7 bits (158), Expect = 3e-12
Identities = 30/76 (39%), Positives = 48/76 (63%)
Frame = +3
Query: 147 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 326
+K+FVGGL T++E +++F +G I + V D NT R RGF FI F + +++D+V+
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLH 169
Query: 327 AGEHTINNKKVDPKKA 374
H +N K V+ K+A
Sbjct: 170 KTFHELNGKLVEVKRA 185
Score = 27.9 bits (59), Expect = 3.4
Identities = 8/21 (38%), Positives = 17/21 (80%)
Frame = +3
Query: 387 GKIFVGGLSSEISDDEIRNFF 449
GK+F+GG+S + ++ +R++F
Sbjct: 6 GKLFIGGISWDTDEERLRDYF 26
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 79.8 bits (188), Expect = 8e-16
Identities = 48/125 (38%), Positives = 70/125 (56%), Gaps = 25/125 (20%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 329
KLF+GG+SW+T ++ LRD+F YG++ + D TGR+RGF FIVF P ++V+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-M 65
Query: 330 GEHTINNKKVDPKKAKAR-------------------HG------KIFVGGLSSEISDDE 434
+H I+ + V+ KKA R HG KIFVGGL S I+++E
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 435 IRNFF 449
+N+F
Sbjct: 126 FKNYF 130
Score = 67.7 bits (158), Expect = 3e-12
Identities = 30/76 (39%), Positives = 48/76 (63%)
Frame = +3
Query: 147 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 326
+K+FVGGL T++E +++F +G I + V D NT R RGF FI F + +++D+V+
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLH 169
Query: 327 AGEHTINNKKVDPKKA 374
H +N K V+ K+A
Sbjct: 170 KTFHELNGKLVEVKRA 185
Score = 27.9 bits (59), Expect = 3.4
Identities = 8/21 (38%), Positives = 17/21 (80%)
Frame = +3
Query: 387 GKIFVGGLSSEISDDEIRNFF 449
GK+F+GG+S + ++ +R++F
Sbjct: 6 GKLFIGGISWDTDEERLRDYF 26
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 79.8 bits (188), Expect = 8e-16
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = +3
Query: 141 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 320
D KLF+GG+SW+T + LR++F +GE+ + V + TGR RGF F+ F P ID+V
Sbjct: 4 DQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRV 63
Query: 321 MAAGEHTINNKKVDPKKAKAR 383
+ +H I+N+ VD K+A +R
Sbjct: 64 L-QDKHHIDNRDVDVKRAMSR 83
Score = 62.9 bits (146), Expect = 1e-10
Identities = 29/76 (38%), Positives = 43/76 (56%)
Frame = +3
Query: 147 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 326
+K+FVGGL T E R +F YG + + D T R RGF F+ F + +S+D V+
Sbjct: 110 KKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLH 169
Query: 327 AGEHTINNKKVDPKKA 374
H +N K+V+ K+A
Sbjct: 170 KTFHDLNGKQVEVKRA 185
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 79.4 bits (187), Expect = 1e-15
Identities = 45/121 (37%), Positives = 68/121 (56%), Gaps = 21/121 (17%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 329
KLF+GG+SWET++ LRD+F ++GE+ + D TGR+RGF F+VF P ++V+
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 330 GEHTINNKKVDPKKAKARHG---------------------KIFVGGLSSEISDDEIRNF 446
+H I+ K V+ KKA R KIFVGGL+S +++ E + +
Sbjct: 67 -KHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKY 125
Query: 447 F 449
F
Sbjct: 126 F 126
Score = 69.7 bits (163), Expect = 8e-13
Identities = 32/83 (38%), Positives = 49/83 (59%)
Frame = +3
Query: 126 APGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 305
+PG + +K+FVGGL+ T+ E + +F +G I + V D T R RGF FI + + E
Sbjct: 99 SPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEE 158
Query: 306 SIDKVMAAGEHTINNKKVDPKKA 374
++DKV+ H +N K V+ K A
Sbjct: 159 AVDKVLQKTFHELNGKMVEVKLA 181
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 79.4 bits (187), Expect = 1e-15
Identities = 45/121 (37%), Positives = 68/121 (56%), Gaps = 21/121 (17%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 329
KLF+GG+SWET++ LRD+F ++GE+ + D TGR+RGF F+VF P ++V+
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 330 GEHTINNKKVDPKKAKARHG---------------------KIFVGGLSSEISDDEIRNF 446
+H I+ K V+ KKA R KIFVGGL+S +++ E + +
Sbjct: 67 -KHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKY 125
Query: 447 F 449
F
Sbjct: 126 F 126
Score = 69.7 bits (163), Expect = 8e-13
Identities = 32/83 (38%), Positives = 49/83 (59%)
Frame = +3
Query: 126 APGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 305
+PG + +K+FVGGL+ T+ E + +F +G I + V D T R RGF FI + + E
Sbjct: 99 SPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEE 158
Query: 306 SIDKVMAAGEHTINNKKVDPKKA 374
++DKV+ H +N K V+ K A
Sbjct: 159 AVDKVLQKTFHELNGKMVEVKLA 181
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 77.8 bits (183), Expect = 3e-15
Identities = 47/128 (36%), Positives = 70/128 (54%), Gaps = 28/128 (21%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 329
KLF+GG+SW+T ++ L+++FG YG++ + D TGR+RGF FIVF P ++V+
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVI-M 74
Query: 330 GEHTINNKKVDPKKAKAR-------------------HG---------KIFVGGLSSEIS 425
+H I+ + V+ KKA R HG KIFVGGL S I+
Sbjct: 75 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSIT 134
Query: 426 DDEIRNFF 449
+ E +N+F
Sbjct: 135 EAEFKNYF 142
Score = 68.5 bits (160), Expect = 2e-12
Identities = 32/76 (42%), Positives = 46/76 (60%)
Frame = +3
Query: 147 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 326
+K+FVGGL T+ E +++F +G I + V D NT R RGF FI F + ES+D V+
Sbjct: 122 KKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLH 181
Query: 327 AGEHTINNKKVDPKKA 374
H +N K V+ K+A
Sbjct: 182 KTFHELNGKMVEVKRA 197
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 76.6 bits (180), Expect = 7e-15
Identities = 33/94 (35%), Positives = 60/94 (63%)
Frame = +3
Query: 135 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 314
+ D+ KLF+GG+SW+T ++ L+++F ++GE+ + D TGR+RGF F+VF P ++
Sbjct: 2 QSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVA 60
Query: 315 KVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSS 416
+++ +H I+ + V+ KKA R + V +S
Sbjct: 61 EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNS 94
Score = 70.1 bits (164), Expect = 6e-13
Identities = 36/99 (36%), Positives = 52/99 (52%)
Frame = +3
Query: 78 NAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPN 257
N N S S PGR RK+FVGGL T+ + + +F +G + V D N
Sbjct: 87 NMVNRSNSSSIQGSPGGPGRT--RKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHN 144
Query: 258 TGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 374
T R RGF FI + + E+++KV+ H +N K V+ K+A
Sbjct: 145 TQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRA 183
Score = 27.1 bits (57), Expect = 5.9
Identities = 7/22 (31%), Positives = 18/22 (81%)
Frame = +3
Query: 384 HGKIFVGGLSSEISDDEIRNFF 449
+GK+F+GG+S + +++ ++ +F
Sbjct: 5 NGKLFIGGISWDTNEERLKEYF 26
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 76.6 bits (180), Expect = 7e-15
Identities = 33/94 (35%), Positives = 60/94 (63%)
Frame = +3
Query: 135 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 314
+ D+ KLF+GG+SW+T ++ L+++F ++GE+ + D TGR+RGF F+VF P ++
Sbjct: 2 QSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVA 60
Query: 315 KVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSS 416
+++ +H I+ + V+ KKA R + V +S
Sbjct: 61 EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNS 94
Score = 70.1 bits (164), Expect = 6e-13
Identities = 36/99 (36%), Positives = 52/99 (52%)
Frame = +3
Query: 78 NAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPN 257
N N S S PGR RK+FVGGL T+ + + +F +G + V D N
Sbjct: 87 NMVNRSNSSSIQGSPGGPGRT--RKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHN 144
Query: 258 TGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 374
T R RGF FI + + E+++KV+ H +N K V+ K+A
Sbjct: 145 TQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRA 183
Score = 27.1 bits (57), Expect = 5.9
Identities = 7/22 (31%), Positives = 18/22 (81%)
Frame = +3
Query: 384 HGKIFVGGLSSEISDDEIRNFF 449
+GK+F+GG+S + +++ ++ +F
Sbjct: 5 NGKLFIGGISWDTNEERLKEYF 26
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 69.7 bits (163), Expect = 8e-13
Identities = 32/83 (38%), Positives = 49/83 (59%)
Frame = +3
Query: 126 APGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 305
+PG + +K+FVGGL+ T+ E + +F +G I + V D T R RGF FI + + E
Sbjct: 26 SPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEE 85
Query: 306 SIDKVMAAGEHTINNKKVDPKKA 374
++DKV+ H +N K V+ K A
Sbjct: 86 AVDKVLQKTFHELNGKMVEVKLA 108
Score = 29.9 bits (64), Expect = 0.83
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = +3
Query: 315 KVMAAGEHTINNKK---VDPKKAKARHGKIFVGGLSSEISDDEIRNFF 449
K + +H + NK + + KIFVGGL+S +++ E + +F
Sbjct: 6 KAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYF 53
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 69.7 bits (163), Expect = 8e-13
Identities = 31/71 (43%), Positives = 44/71 (61%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 329
K+FVGGL+WET + LR HF YGEI V D NTGRS+G+ F+ F+ PE+ + A
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD 84
Query: 330 GEHTINNKKVD 362
I+ ++ +
Sbjct: 85 PTPIIDGRRAN 95
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 68.5 bits (160), Expect = 2e-12
Identities = 29/53 (54%), Positives = 38/53 (71%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 308
K+FVGGL+WET + LR HF YG+I V TD NTGRS+G+ F+ F+ PE+
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEA 77
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 68.1 bits (159), Expect = 3e-12
Identities = 29/81 (35%), Positives = 51/81 (62%)
Frame = +3
Query: 147 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 326
+K+FVGGLS TT++E + +F +G + V D T R RGF F+ + + +S++ VM
Sbjct: 120 KKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQ 179
Query: 327 AGEHTINNKKVDPKKAKARHG 389
+ H +++K+V+ K+A + G
Sbjct: 180 SNFHELSDKRVEVKRAIPKEG 200
Score = 56.4 bits (130), Expect(2) = 5e-12
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Frame = +3
Query: 138 DDDR-KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 314
D DR KLFVGG++ ET+++ L+ +F YG + V + TG+ RGF F+ F +
Sbjct: 2 DYDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVV 61
Query: 315 KVMAAGEHTINNKKVDPKKAKARH 386
K + H I K VD +KA +H
Sbjct: 62 KAL-RDTHFILGKPVDVRKAIRKH 84
Score = 30.7 bits (66), Expect(2) = 5e-12
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = +3
Query: 378 ARHGKIFVGGLSSEISDDEIRNFF 449
+R KIFVGGLSS +++E +++F
Sbjct: 117 SRTKKIFVGGLSSNTTEEEFKSYF 140
Score = 26.6 bits (56), Expect = 7.7
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = +3
Query: 390 KIFVGGLSSEISDDEIRNFF 449
K+FVGG++ E S++ ++ +F
Sbjct: 7 KLFVGGIAKETSEEALKQYF 26
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 66.1 bits (154), Expect = 1e-11
Identities = 28/71 (39%), Positives = 45/71 (63%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 329
K+FVGGL+WET E+R +F +GEI + TD NTG+S+G+ F+ F+ +S + +A
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 330 GEHTINNKKVD 362
I+ +K +
Sbjct: 78 PNPVIDGRKAN 88
Score = 28.3 bits (60), Expect = 2.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 390 KIFVGGLSSEISDDEIRNFF 449
K+FVGGL+ E DE+R +F
Sbjct: 18 KVFVGGLAWETPTDEMRRYF 37
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 66.1 bits (154), Expect = 1e-11
Identities = 28/71 (39%), Positives = 45/71 (63%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 329
K+FVGGL+WET E+R +F +GEI + TD NTG+S+G+ F+ F+ +S + +A
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 330 GEHTINNKKVD 362
I+ +K +
Sbjct: 78 PNPVIDGRKAN 88
Score = 28.3 bits (60), Expect = 2.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 390 KIFVGGLSSEISDDEIRNFF 449
K+FVGGL+ E DE+R +F
Sbjct: 18 KVFVGGLAWETPTDEMRRYF 37
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 65.3 bits (152), Expect = 2e-11
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +3
Query: 138 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 317
D + + F+GGL+W T+D+ LRD F YG + V D +GRSRGF FI F +++D+
Sbjct: 4 DPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDE 63
Query: 318 VMAA-GEHTINNKKVDPKKAKARHG 389
+AA ++ + + KA+ G
Sbjct: 64 AIAAMNGMDLDGRTITVDKAQPHQG 88
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 64.1 bits (149), Expect = 4e-11
Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 9/111 (8%)
Frame = +3
Query: 144 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 323
+RKL V G+ W+ L+D+ +G++E V D +TGRSRGF ++ F + E +
Sbjct: 2 ERKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL 61
Query: 324 AAGEHTINNKKVDPKKAKARH---------GKIFVGGLSSEISDDEIRNFF 449
GEH + N+ ++ K A + +IFV + S +S+ + R+ F
Sbjct: 62 -KGEHFLGNRILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHF 111
Score = 51.2 bits (117), Expect = 3e-07
Identities = 28/83 (33%), Positives = 40/83 (48%)
Frame = +3
Query: 111 HNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIV 290
+ E R K+FVG L E + +LRD+FG +G I+ + DP RGF F+
Sbjct: 228 YGRGEPTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVT 287
Query: 291 FKAPESIDKVMAAGEHTINNKKV 359
F D+V A H I ++V
Sbjct: 288 FAENGVADRV-ARRSHEICGQEV 309
Score = 45.2 bits (102), Expect = 2e-05
Identities = 18/58 (31%), Positives = 33/58 (56%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 323
++FV + ++ + R HF YGEI + + D N+ + RG FI F + +S++ +M
Sbjct: 92 RIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLM 149
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 64.1 bits (149), Expect = 4e-11
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Frame = +3
Query: 123 EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 299
E+ RD R +FV G W+TT + L+ F +YGEIE +V D +TGR +G+ F++FK
Sbjct: 399 ESADRDIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKT 458
Query: 300 PESIDKVMAAGEHTINNKKVDPKKAKARHGK 392
+ + + E + N+ V A + GK
Sbjct: 459 RKGAREALKRPEKRMYNRIVVCNLASEKPGK 489
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 62.9 bits (146), Expect = 1e-10
Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Frame = +3
Query: 63 NQLNGNAENGGGDSQDHNSAEAPG--RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESI 236
N+L+G G S + G R KLFVGGLSW T D L+ F ++GE+
Sbjct: 5 NKLSGILRQGVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEA 64
Query: 237 NVKTDPNTGRSRGFAFIVFKAPESIDKVM 323
V D TGRSRGF F+ F +S + +
Sbjct: 65 TVIADRETGRSRGFGFVSFSCEDSANNAI 93
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 62.9 bits (146), Expect = 1e-10
Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Frame = +3
Query: 63 NQLNGNAENGGGDSQDHNSAEAPG--RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESI 236
N+L+G G S + G R KLFVGGLSW T D L+ F ++GE+
Sbjct: 5 NKLSGILRQGVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEA 64
Query: 237 NVKTDPNTGRSRGFAFIVFKAPESIDKVM 323
V D TGRSRGF F+ F +S + +
Sbjct: 65 TVIADRETGRSRGFGFVSFSCEDSANNAI 93
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 62.9 bits (146), Expect = 1e-10
Identities = 27/71 (38%), Positives = 44/71 (61%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 329
K+FVGGL+WET E+R +F +GEI + TD TG+S+G+ F+ F+ +S + +A
Sbjct: 18 KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVAD 77
Query: 330 GEHTINNKKVD 362
I+ +K +
Sbjct: 78 PNPVIDGRKAN 88
Score = 30.7 bits (66), Expect = 0.48
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 384 HGKIFVGGLSSEISDDEIRNFF 449
H K+FVGGL+ E DE+R +F
Sbjct: 16 HTKVFVGGLAWETPTDEMRRYF 37
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 62.1 bits (144), Expect = 2e-10
Identities = 27/53 (50%), Positives = 36/53 (67%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 308
K+FVGGL+WET +R +F +GEI V TD NTGRS+G+ F+ FK E+
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEA 75
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 61.7 bits (143), Expect = 2e-10
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Frame = +3
Query: 123 EAPGRDDD-RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 299
E+ RD R +FV GL W+TT + L+ F YGEI +V D +TGR++GF F++FK
Sbjct: 154 ESADRDSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKT 213
Query: 300 PESIDKVMAAGEHTINNKKV 359
+ + E + N+ V
Sbjct: 214 RKGARAALKNPEKRMYNRTV 233
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 61.7 bits (143), Expect = 2e-10
Identities = 28/78 (35%), Positives = 42/78 (53%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 329
K+FVGG+S+ T + LR+ F YGE+ + D TGRSRGFAF+ F + E M
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQL 94
Query: 330 GEHTINNKKVDPKKAKAR 383
++ +++ A R
Sbjct: 95 DGQDLHGRRIRVNYATER 112
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 60.9 bits (141), Expect = 4e-10
Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Frame = +3
Query: 123 EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 299
EA RD RK+FV GL WETT + L F YGEIE V D TG+++GF F++FK
Sbjct: 95 EAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKT 154
Query: 300 PESIDKVMAAGEHTINNK 353
+ + + + I N+
Sbjct: 155 RKGAKEALKEPKKRILNR 172
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 60.9 bits (141), Expect = 4e-10
Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Frame = +3
Query: 123 EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 299
EA RD RK+FV GL WETT + L F YGEIE V D TG+++GF F++FK
Sbjct: 95 EAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKT 154
Query: 300 PESIDKVMAAGEHTINNK 353
+ + + + I N+
Sbjct: 155 RKGAKEALKEPKKRILNR 172
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 60.9 bits (141), Expect = 4e-10
Identities = 27/71 (38%), Positives = 43/71 (60%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 329
K+FVGGL+WET LR++F +G+I V TD ++GRS+G+ F+ F PE+ K
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 330 GEHTINNKKVD 362
I+ ++ +
Sbjct: 68 PAPVIDGRRAN 78
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 60.9 bits (141), Expect = 4e-10
Identities = 27/71 (38%), Positives = 43/71 (60%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 329
K+FVGGL+WET LR++F +G+I V TD ++GRS+G+ F+ F PE+ K
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 330 GEHTINNKKVD 362
I+ ++ +
Sbjct: 68 PAPVIDGRRAN 78
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 60.5 bits (140), Expect = 5e-10
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Frame = +3
Query: 138 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-D 314
D + + FVGGL+W T D+ L F YG++ + D TGRSRGF F+ FK +++ D
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 315 KVMAAGEHTINNKKVDPKKAKAR 383
+ ++ + + +A++R
Sbjct: 65 AIEGMNGQDLDGRSITVNEAQSR 87
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 60.5 bits (140), Expect = 5e-10
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Frame = +3
Query: 138 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-D 314
D + + FVGGL+W T D+ L F YG++ + D TGRSRGF F+ FK +++ D
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 315 KVMAAGEHTINNKKVDPKKAKAR 383
+ ++ + + +A++R
Sbjct: 65 AIEGMNGQDLDGRSITVNEAQSR 87
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 59.7 bits (138), Expect = 9e-10
Identities = 26/48 (54%), Positives = 31/48 (64%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 293
KLF+GGLSW T D LRD F +G++ V D TGRSRGF F+ F
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNF 83
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 59.7 bits (138), Expect = 9e-10
Identities = 26/48 (54%), Positives = 31/48 (64%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 293
KLF+GGLSW T D LRD F +G++ V D TGRSRGF F+ F
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNF 83
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 59.3 bits (137), Expect = 1e-09
Identities = 22/48 (45%), Positives = 33/48 (68%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 293
KLF+GGLSW ++ L+D F ++GE+ + + D +GRSRGF F+ F
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDF 89
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 59.3 bits (137), Expect = 1e-09
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +3
Query: 144 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKV 320
+ ++FVGGLSW+ T+++L F YG+I + +TGR RGF FI F D +
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70
Query: 321 MAAGEHTINNKKVDPKKAKARHG 389
+ NK + KA+ + G
Sbjct: 71 KHMHGRELGNKVISVNKAEPKVG 93
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 59.3 bits (137), Expect = 1e-09
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +3
Query: 144 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKV 320
+ ++FVGGLSW+ T+++L F YG+I + +TGR RGF FI F D +
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70
Query: 321 MAAGEHTINNKKVDPKKAKARHG 389
+ NK + KA+ + G
Sbjct: 71 KHMHGRELGNKVISVNKAEPKVG 93
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 58.8 bits (136), Expect = 2e-09
Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Frame = +3
Query: 114 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 293
+ AE PG L+V GLS T+++L DHF G++ +++ DP T SRGF FI
Sbjct: 68 SDAENPGNS----LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISM 123
Query: 294 KAPESIDKVMAAGEHTI-NNKKVDPKKAKARHGK 392
K+ ++ + + +H++ + + +KA+ R G+
Sbjct: 124 KSVGDANRCIRSLDHSVLQGRVITVEKARRRRGR 157
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 58.0 bits (134), Expect = 3e-09
Identities = 25/71 (35%), Positives = 41/71 (57%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 329
K+FVGGL+WET + ++ HF +GEI V TD +GRS+G+ F+ F+ E+
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 330 GEHTINNKKVD 362
I+ ++ +
Sbjct: 74 ATPVIDGRRAN 84
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 58.0 bits (134), Expect = 3e-09
Identities = 25/71 (35%), Positives = 41/71 (57%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 329
K+FVGGL+WET + ++ HF +GEI V TD +GRS+G+ F+ F+ E+
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 330 GEHTINNKKVD 362
I+ ++ +
Sbjct: 74 ATPVIDGRRAN 84
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 58.0 bits (134), Expect = 3e-09
Identities = 25/71 (35%), Positives = 41/71 (57%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 329
K+FVGGL+WET + ++ HF +GEI V TD +GRS+G+ F+ F+ E+
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 330 GEHTINNKKVD 362
I+ ++ +
Sbjct: 74 ATPVIDGRRAN 84
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 57.2 bits (132), Expect = 5e-09
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Frame = +3
Query: 72 NGNAENGGGDSQDHNSAEAPGRD--DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVK 245
+G+A GD + ++A D D +LFV L + T++EL +HF +G+I +++
Sbjct: 234 DGDAMEVEGDGKVAQESKAVSDDVLDTGRLFVRNLPYTATEEELMEHFSTFGKISEVHLV 293
Query: 246 TDPNTGRSRGFAFIVFKAPESIDKVM 323
D T RSRG A+I++ PE + M
Sbjct: 294 LDKETKRSRGIAYILYLIPECAARAM 319
Score = 37.9 bits (84), Expect = 0.003
Identities = 18/48 (37%), Positives = 30/48 (62%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 293
KL V +++E T +ELR F +G+I+S+ + N G+ G+AF+ F
Sbjct: 670 KLHVKNIAFEATKRELRQLFSPFGQIKSMRL-PKKNIGQYAGYAFVEF 716
Score = 28.3 bits (60), Expect = 2.5
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Frame = +3
Query: 129 PGRDDDRKLFVGGLSWETTDKELRDHFG---AYGEIESINVKTDPNTGR--SRGFAFIVF 293
P + L V LS++TTD+ L+ HF G+I S+ + + S G+ F+ F
Sbjct: 563 PDVTESNVLNVKNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGFVEF 622
Query: 294 KAPESIDKV 320
+ E+ V
Sbjct: 623 DSVETATSV 631
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 56.8 bits (131), Expect = 6e-09
Identities = 29/79 (36%), Positives = 42/79 (53%)
Frame = +3
Query: 138 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 317
D + K++V GL W T + L +F +GEI V D T RS+GF F+ F+ ES +
Sbjct: 6 DRETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATR 65
Query: 318 VMAAGEHTINNKKVDPKKA 374
HTI+ + V+ K A
Sbjct: 66 ACENPNHTIDGRTVNCKLA 84
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 56.4 bits (130), Expect = 8e-09
Identities = 26/71 (36%), Positives = 41/71 (57%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 329
+ FVGGL+W T D++L+ F +G++ + D +GRSRGF F+ FK +K M
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRD 62
Query: 330 GEHTINNKKVD 362
+N K++D
Sbjct: 63 AIEEMNGKELD 73
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 56.4 bits (130), Expect = 8e-09
Identities = 26/71 (36%), Positives = 41/71 (57%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 329
+ FVGGL+W T D++L+ F +G++ + D +GRSRGF F+ FK +K M
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRD 62
Query: 330 GEHTINNKKVD 362
+N K++D
Sbjct: 63 AIEEMNGKELD 73
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 56.4 bits (130), Expect = 8e-09
Identities = 26/71 (36%), Positives = 41/71 (57%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 329
+ FVGGL+W T D++L+ F +G++ + D +GRSRGF F+ FK +K M
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRD 62
Query: 330 GEHTINNKKVD 362
+N K++D
Sbjct: 63 AIEEMNGKELD 73
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 55.6 bits (128), Expect = 1e-08
Identities = 24/60 (40%), Positives = 35/60 (58%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 329
KLF+GG+++ + LR+ F YGE+ V D TGRSRGF F+ F + E+ + A
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 55.2 bits (127), Expect = 2e-08
Identities = 28/75 (37%), Positives = 40/75 (53%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 329
K++VGGL W T + L + F +GEI +NV D T RS+G+ F+ FK ES +
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKD 73
Query: 330 GEHTINNKKVDPKKA 374
TI + + K A
Sbjct: 74 PNPTIEGRITNCKLA 88
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 55.2 bits (127), Expect = 2e-08
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 6/79 (7%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 329
++FVGGLS E TD++L F +G+I + + +TGRSRGF FI F ++D+ +
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 330 ------GEHTINNKKVDPK 368
G+ I+ + +PK
Sbjct: 68 MHGRDFGDRVISVNRAEPK 86
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +3
Query: 378 ARHG-KIFVGGLSSEISDDEIRNFF 449
A+ G +IFVGGLS E++D ++ F
Sbjct: 3 AKEGSRIFVGGLSPEVTDRDLERAF 27
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 55.2 bits (127), Expect = 2e-08
Identities = 24/71 (33%), Positives = 41/71 (57%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 329
K+FVGGL+W+T + + DHF YG+I + +D T RS+G+ F+ FK ++ +
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACED 77
Query: 330 GEHTINNKKVD 362
IN ++ +
Sbjct: 78 STPIINGRRAN 88
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 54.8 bits (126), Expect = 3e-08
Identities = 24/59 (40%), Positives = 39/59 (66%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 326
+LFV GLS TT+++L+D F ++G++ V TD ++GRS+GF F+ + E +K A
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKA 93
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 54.8 bits (126), Expect = 3e-08
Identities = 22/58 (37%), Positives = 36/58 (62%)
Frame = +3
Query: 138 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 311
D++ + FVGGL+W T ++ + F +GE+ + D TGRS+GF F+ FK +S+
Sbjct: 41 DNEYRCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSM 98
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 54.0 bits (124), Expect = 4e-08
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 296
+ FVGGL+W T D++L+ F +G++ + D +GRSRGF F+ FK
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFK 55
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 54.0 bits (124), Expect = 4e-08
Identities = 24/63 (38%), Positives = 35/63 (55%)
Frame = +3
Query: 138 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 317
D K++ G L W T + L+D FG + V + NTGRSRGF FI F++ E++
Sbjct: 216 DSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQS 275
Query: 318 VMA 326
+A
Sbjct: 276 ALA 278
Score = 48.4 bits (110), Expect = 2e-06
Identities = 31/139 (22%), Positives = 63/139 (45%), Gaps = 1/139 (0%)
Frame = +3
Query: 30 NDNFAQDITTDNQLNGNAENGGGD-SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDH 206
+D + + ++ + G + ++ + +A G ++ +L+VG L + T EL
Sbjct: 78 DDEIQASVEEEEEVEEEGDEGEEEVEEEKQTTQASG--EEGRLYVGNLPYTITSSELSQI 135
Query: 207 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 386
FG G + + + D T RSRGF F+ + E + M N+ ++ + K
Sbjct: 136 FGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAM----QMFNSSQIGGRTVKVNF 191
Query: 387 GKIFVGGLSSEISDDEIRN 443
++ GG +E+ +IR+
Sbjct: 192 PEVPRGG-ENEVMRTKIRD 209
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 54.0 bits (124), Expect = 4e-08
Identities = 32/101 (31%), Positives = 54/101 (53%)
Frame = +3
Query: 147 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 326
RKLF+ GL+ +TT + LR F +YG++E V D TG+S+G+ F+ F +D +
Sbjct: 75 RKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFM---HVDGALL 131
Query: 327 AGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFF 449
A + +KK+D + + G S+I+D +R +
Sbjct: 132 ALKEP--SKKIDGRVTVTQLAASGNQGTGSQIADISMRKIY 170
Score = 51.2 bits (117), Expect = 3e-07
Identities = 26/76 (34%), Positives = 41/76 (53%)
Frame = +3
Query: 147 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 326
RK++V + ++ L +HF AYG++E + D TG+SRGFA V+K E +A
Sbjct: 167 RKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALA 226
Query: 327 AGEHTINNKKVDPKKA 374
I+ K ++ K A
Sbjct: 227 DPVKVIDGKHLNCKLA 242
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 54.0 bits (124), Expect = 4e-08
Identities = 32/101 (31%), Positives = 54/101 (53%)
Frame = +3
Query: 147 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 326
RKLF+ GL+ +TT + LR F +YG++E V D TG+S+G+ F+ F +D +
Sbjct: 75 RKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFM---HVDGALL 131
Query: 327 AGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFF 449
A + +KK+D + + G S+I+D +R +
Sbjct: 132 ALKEP--SKKIDGRVTVTQLAASGNQGTGSQIADISMRKIY 170
Score = 51.2 bits (117), Expect = 3e-07
Identities = 26/76 (34%), Positives = 41/76 (53%)
Frame = +3
Query: 147 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 326
RK++V + ++ L +HF AYG++E + D TG+SRGFA V+K E +A
Sbjct: 167 RKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALA 226
Query: 327 AGEHTINNKKVDPKKA 374
I+ K ++ K A
Sbjct: 227 DPVKVIDGKHLNCKLA 242
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 54.0 bits (124), Expect = 4e-08
Identities = 25/77 (32%), Positives = 43/77 (55%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 329
K+FVG L+W TT +LR +F +G++ NV ++ GRS+G+ FI F+ S + +
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQN 72
Query: 330 GEHTINNKKVDPKKAKA 380
+ I+ + + A A
Sbjct: 73 SKPIIDGRTTNCNLASA 89
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 54.0 bits (124), Expect = 4e-08
Identities = 27/82 (32%), Positives = 46/82 (56%)
Frame = +3
Query: 114 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 293
+ AE PG L+V GLS T+++L DHF G++ +++ DP T SRGF FI
Sbjct: 38 SDAENPGNS----LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISM 93
Query: 294 KAPESIDKVMAAGEHTINNKKV 359
K+ ++ + + +H++ +V
Sbjct: 94 KSVGDANRCIRSLDHSVLQGRV 115
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 53.6 bits (123), Expect = 6e-08
Identities = 24/51 (47%), Positives = 32/51 (62%)
Frame = +3
Query: 147 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 299
RK+FV GL W+T L D F YGEIE D +G+S+G+ FI+FK+
Sbjct: 128 RKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKS 178
Score = 46.0 bits (104), Expect = 1e-05
Identities = 24/76 (31%), Positives = 39/76 (51%)
Frame = +3
Query: 147 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 326
RK++V +S + ++L + F +GEIE + D TGR +GFA V+++ ES K +
Sbjct: 227 RKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALE 286
Query: 327 AGEHTINNKKVDPKKA 374
T + KA
Sbjct: 287 EPHKTFEGHVLHCHKA 302
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 52.8 bits (121), Expect = 1e-07
Identities = 22/50 (44%), Positives = 33/50 (66%)
Frame = +3
Query: 144 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 293
DRKL+VG L + ++ +LR F A+G +E + + DP TG+ +GF FI F
Sbjct: 264 DRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQF 313
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 52.8 bits (121), Expect = 1e-07
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Frame = +3
Query: 75 GNAENGGG------DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESI 236
G+ +GGG S S G +L+VG LSW D L + F G++
Sbjct: 219 GSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEA 278
Query: 237 NVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKAR 383
V D ++GRS+GF F+ + + + K + + ++ +++ +A+AR
Sbjct: 279 RVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEAR 328
Score = 51.6 bits (118), Expect = 2e-07
Identities = 26/92 (28%), Positives = 40/92 (43%)
Frame = +3
Query: 39 FAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAY 218
F +++ + ++ D D E D KLFVG LS+ +L F +
Sbjct: 63 FVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESA 122
Query: 219 GEIESINVKTDPNTGRSRGFAFIVFKAPESID 314
G +E + V D TGRSRGF F+ ++
Sbjct: 123 GNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 52.8 bits (121), Expect = 1e-07
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Frame = +3
Query: 75 GNAENGGG------DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESI 236
G+ +GGG S S G +L+VG LSW D L + F G++
Sbjct: 227 GSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEA 286
Query: 237 NVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKAR 383
V D ++GRS+GF F+ + + + K + + ++ +++ +A+AR
Sbjct: 287 RVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEAR 336
Score = 51.6 bits (118), Expect = 2e-07
Identities = 26/92 (28%), Positives = 40/92 (43%)
Frame = +3
Query: 39 FAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAY 218
F +++ + ++ D D E D KLFVG LS+ +L F +
Sbjct: 63 FVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESA 122
Query: 219 GEIESINVKTDPNTGRSRGFAFIVFKAPESID 314
G +E + V D TGRSRGF F+ ++
Sbjct: 123 GNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 52.8 bits (121), Expect = 1e-07
Identities = 25/63 (39%), Positives = 35/63 (55%)
Frame = +3
Query: 138 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 317
+ K++VG L W T LR+HF +G I S V D TGR+R FAF+ F + E D
Sbjct: 209 ESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDA 268
Query: 318 VMA 326
++
Sbjct: 269 ALS 271
Score = 31.9 bits (69), Expect = 0.21
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +3
Query: 192 ELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT 341
+L D F +G + S+ V +P TG SRG ++ + S +A+ + T
Sbjct: 123 QLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGT 172
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 52.4 bits (120), Expect = 1e-07
Identities = 25/70 (35%), Positives = 44/70 (62%)
Frame = +3
Query: 99 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 278
DS+D + +E+P +KLF+ GLS+ T++K LR F +GE+ + + D + RS+G+
Sbjct: 267 DSRDQDDSESPPVKT-KKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGY 325
Query: 279 AFIVFKAPES 308
AF+ + E+
Sbjct: 326 AFLEYTTEEA 335
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 52.0 bits (119), Expect = 2e-07
Identities = 26/101 (25%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Frame = +3
Query: 66 QLNGNAENGGGDSQDHN---SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESI 236
++ AE G SQD + SA D R ++VG + + T +E++ HF + G + +
Sbjct: 73 EMQAKAEKDMGASQDPSGGVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRV 132
Query: 237 NVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 359
+ TD G+ +GFA++ F E++ + E ++ +++
Sbjct: 133 TILTD-KFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQI 172
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 51.6 bits (118), Expect = 2e-07
Identities = 22/51 (43%), Positives = 33/51 (64%)
Frame = +3
Query: 147 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 299
RK+FV GL W+T + L + F YGEIE D +G+S+G+ FI++K+
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
Score = 41.9 bits (94), Expect = 2e-04
Identities = 22/76 (28%), Positives = 37/76 (48%)
Frame = +3
Query: 147 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 326
+K++V + E ++L F +GEIE + D TGR +GF V+K+ ES + +
Sbjct: 245 KKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALE 304
Query: 327 AGEHTINNKKVDPKKA 374
T + +KA
Sbjct: 305 EPHKTFEGHILHCQKA 320
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 51.6 bits (118), Expect = 2e-07
Identities = 22/51 (43%), Positives = 33/51 (64%)
Frame = +3
Query: 147 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 299
RK+FV GL W+T + L + F YGEIE D +G+S+G+ FI++K+
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
Score = 41.9 bits (94), Expect = 2e-04
Identities = 22/76 (28%), Positives = 37/76 (48%)
Frame = +3
Query: 147 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 326
+K++V + E ++L F +GEIE + D TGR +GF V+K+ ES + +
Sbjct: 245 KKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALE 304
Query: 327 AGEHTINNKKVDPKKA 374
T + +KA
Sbjct: 305 EPHKTFEGHILHCQKA 320
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 51.6 bits (118), Expect = 2e-07
Identities = 22/51 (43%), Positives = 33/51 (64%)
Frame = +3
Query: 147 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 299
RK+FV GL W+T + L + F YGEIE D +G+S+G+ FI++K+
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
Score = 41.9 bits (94), Expect = 2e-04
Identities = 22/76 (28%), Positives = 37/76 (48%)
Frame = +3
Query: 147 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 326
+K++V + E ++L F +GEIE + D TGR +GF V+K+ ES + +
Sbjct: 245 KKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALE 304
Query: 327 AGEHTINNKKVDPKKA 374
T + +KA
Sbjct: 305 EPHKTFEGHILHCQKA 320
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 51.2 bits (117), Expect = 3e-07
Identities = 23/72 (31%), Positives = 40/72 (55%)
Frame = +3
Query: 114 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 293
+S G + ++FVGGL + T+ ++R+ ++G + N+ D TG S+G+AF V+
Sbjct: 364 SSGSTGGLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVY 423
Query: 294 KAPESIDKVMAA 329
+ P D AA
Sbjct: 424 QDPSVTDIACAA 435
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 50.4 bits (115), Expect = 5e-07
Identities = 25/67 (37%), Positives = 34/67 (50%)
Frame = +3
Query: 123 EAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 302
EA + L+V L TD +LR+HF +G I S V DP +G SRG F+ F P
Sbjct: 319 EAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTP 377
Query: 303 ESIDKVM 323
E + +
Sbjct: 378 EEATRAI 384
Score = 46.0 bits (104), Expect = 1e-05
Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 13/142 (9%)
Frame = +3
Query: 63 NQLNGNAENGGGDSQDHNSAEAPGRDDD-RKLFVGGLSWETTDKELRDHFGAYGEIESIN 239
N+LN A NG ++ + R +F+ L K L + F A+G I S
Sbjct: 104 NELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCK 163
Query: 240 VKTDPNTGRSRGFAFIVFKAPESIDKVM-AAGEHTINNKKV-----------DPKKAKAR 383
V DP+ G+S+G+ F+ + E+ + +N+K+V DP K +
Sbjct: 164 VAVDPS-GQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVK 222
Query: 384 HGKIFVGGLSSEISDDEIRNFF 449
++V LS +SD+E+ F
Sbjct: 223 FTNVYVKNLSESLSDEELNKVF 244
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 50.0 bits (114), Expect = 7e-07
Identities = 25/97 (25%), Positives = 47/97 (48%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 329
++F+GGL + +++LRD GEI + + D ++G S+G+AF+ FK + K +
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 176
Query: 330 GEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIR 440
K ++F+G + ++DE R
Sbjct: 177 LHSKEFKGKTIRCSLSETKNRLFIGNIPKNWTEDEFR 213
Score = 35.9 bits (79), Expect = 0.013
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGE-IESINVKTDP-NTGRSRGFAFIVF 293
+LF+G + T+ E R G +E+I + DP NT R+RGFAF+++
Sbjct: 197 RLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLY 246
Score = 32.3 bits (70), Expect = 0.16
Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 1/110 (0%)
Frame = +3
Query: 51 ITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIE 230
I ++ +L GNA + + + L+V + T+ ++L++ F +GE+
Sbjct: 260 IDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVT 319
Query: 231 SINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVDPKKAK 377
I T P G R F F+ + S K + E + +N + ++ AK
Sbjct: 320 KI--VTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAK 367
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 50.0 bits (114), Expect = 7e-07
Identities = 30/73 (41%), Positives = 40/73 (54%)
Frame = +3
Query: 153 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 332
++V LS TTD EL+ FG YG I S V D G+SR F F+ F+ PE + + A
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRD-GDGKSRCFGFVNFENPEDAARAVEA- 284
Query: 333 EHTINNKKVDPKK 371
+N KK D K+
Sbjct: 285 ---LNGKKFDDKE 294
Score = 45.2 bits (102), Expect = 2e-05
Identities = 23/72 (31%), Positives = 37/72 (51%)
Frame = +3
Query: 108 DHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFI 287
+ S++ + D L+V L TD++LR+ F +G I S V DP +G S+G F+
Sbjct: 315 EQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFV 373
Query: 288 VFKAPESIDKVM 323
F A +V+
Sbjct: 374 AFSAASEASRVL 385
Score = 42.7 bits (96), Expect = 1e-04
Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 8/133 (6%)
Frame = +3
Query: 75 GNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDP 254
G GGGD H + + L+VG L + TD +L D+F ++ S+ V D
Sbjct: 30 GIGVGGGGDGVTHGALCS--------LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDA 81
Query: 255 NTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV--------DPKKAKARHGKIFVGGL 410
T S G+ ++ + + +K M ++ N K+ D ++ G +FV L
Sbjct: 82 ATNTSLGYGYVNYSNTDDAEKAMQKLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNL 141
Query: 411 SSEISDDEIRNFF 449
+ + + F
Sbjct: 142 DKSVDNKTLHEAF 154
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 50.0 bits (114), Expect = 7e-07
Identities = 21/62 (33%), Positives = 34/62 (54%)
Frame = +3
Query: 138 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 317
+ + KLFVG LSW T + L F G++ V D +TGRSRG+ F+ + + ++
Sbjct: 174 ETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMET 233
Query: 318 VM 323
+
Sbjct: 234 AL 235
Score = 32.7 bits (71), Expect = 0.12
Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 12/112 (10%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE-------S 308
KL+ G L + L + E + V + +TG+SRGFAF+ E +
Sbjct: 86 KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDN 145
Query: 309 IDKVMAAGEHTINNKKVDPKKAK-----ARHGKIFVGGLSSEISDDEIRNFF 449
+D G N PK K K+FVG LS ++ + + F
Sbjct: 146 LDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAF 197
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 50.0 bits (114), Expect = 7e-07
Identities = 29/71 (40%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Frame = +3
Query: 96 GDSQDHNSAEAPGRDDDRK----LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 263
G N A A G+ +D +FVG LS E TD L D F A+ V D TG
Sbjct: 127 GQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTG 186
Query: 264 RSRGFAFIVFK 296
RSRGF F+ F+
Sbjct: 187 RSRGFGFVSFR 197
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 49.6 bits (113), Expect = 1e-06
Identities = 22/60 (36%), Positives = 37/60 (61%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 329
KL++GGLS T + L+D F ++ + V T+ TGRSRG+ F+ F + +S + ++A
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 49.6 bits (113), Expect = 1e-06
Identities = 24/109 (22%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Frame = +3
Query: 60 DNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESIN 239
D G + G + G +++VG LSW D L F G++
Sbjct: 175 DGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEAR 234
Query: 240 VKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT-INNKKVDPKKAKAR 383
V D ++GRS+GF F+ + + + + + + + ++ +++ +A+AR
Sbjct: 235 VIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEAR 283
Score = 48.0 bits (109), Expect = 3e-06
Identities = 28/82 (34%), Positives = 41/82 (50%)
Frame = +3
Query: 144 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 323
D KLFVG L + +L F + G +E + V D TGRSRGF F+ S+ +V
Sbjct: 90 DLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTM---SSVSEVE 146
Query: 324 AAGEHTINNKKVDPKKAKARHG 389
AA + N ++D + + G
Sbjct: 147 AAAQQ-FNGYELDGRPLRVNAG 167
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 49.6 bits (113), Expect = 1e-06
Identities = 27/71 (38%), Positives = 42/71 (59%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 329
K+FVGGLS T + L++ FG++G+I V D +G SRGF F+ + + E + M A
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA 96
Query: 330 GEHTINNKKVD 362
+ NK++D
Sbjct: 97 ----MQNKELD 103
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 43.2 bits (97), Expect(2) = 1e-06
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +3
Query: 144 DRKLFVGGLSWETTDKELRDHFG-AYGEIESINVKTDPNTGRSRGFAFIVF 293
D +FVG LS + TD L + F Y ++S V D NTGRS+G+ F+ F
Sbjct: 201 DLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRF 251
Score = 38.7 bits (86), Expect = 0.002
Identities = 20/73 (27%), Positives = 36/73 (49%)
Frame = +3
Query: 105 QDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAF 284
Q H + + DD + L+VG L + L F GE+ S+ V + T +S G+ F
Sbjct: 94 QQHKAIDRGSGDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGF 153
Query: 285 IVFKAPESIDKVM 323
+ F + + ++V+
Sbjct: 154 VEFLSRAAAEEVL 166
Score = 36.7 bits (81), Expect = 0.007
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +3
Query: 87 NGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 263
+G S + S ++ G + +FVGG+ + D++LR F +GE+ S+ + G
Sbjct: 302 HGSNGSMGYGS-QSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCG 359
Score = 25.8 bits (54), Expect(2) = 1e-06
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +3
Query: 306 SIDKVMAAGEHTINNKKV--DPKKAKARHGKIFVGGLSSEISDDEIRNFF 449
S V+ AG H N ++ + IFVGG+ ++ D+++R F
Sbjct: 292 SSQAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPF 341
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 49.2 bits (112), Expect = 1e-06
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMA 326
KLF+GGLS+ TT++ L + F G++ + D + RS+GF F+ F + + K +M
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 327 AGEHTINNKKVDPKKAKAR 383
+N + + AKA+
Sbjct: 95 FNGQQLNGRTIFVDYAKAK 113
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 48.8 bits (111), Expect = 2e-06
Identities = 20/52 (38%), Positives = 34/52 (65%)
Frame = +3
Query: 153 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 308
++VGG+ ++ T+ +L F YGEI +N+ D TG+S+GFAF+ ++ S
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRS 89
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 48.4 bits (110), Expect = 2e-06
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +3
Query: 144 DRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 320
D +FVG L+ + TD L++ F Y + V TDP+TGRS+G+ F+ F ++
Sbjct: 115 DHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRA 174
Query: 321 MA 326
MA
Sbjct: 175 MA 176
Score = 33.5 bits (73), Expect = 0.067
Identities = 16/62 (25%), Positives = 32/62 (51%)
Frame = +3
Query: 138 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 317
++ R L++G L + + L F GE+ S+ V + TG+ G+ FI F + + ++
Sbjct: 21 EEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAER 80
Query: 318 VM 323
+
Sbjct: 81 TL 82
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 48.4 bits (110), Expect = 2e-06
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 329
KL+V GLS+ TT+ LRD F +G + +N+ D R +GFAF+ ++ E K +
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAI-Q 136
Query: 330 GEH--TINNKKVDPKKAKAR 383
G H ++ + + ++AK R
Sbjct: 137 GMHGKFLDGRVIFVEEAKTR 156
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 48.0 bits (109), Expect = 3e-06
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 329
+++VG LS TTD LR+ F YG + V D T RSRGF F+ + + + ++
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 330 GE-HTINNKKVDPK 368
+ +N ++V K
Sbjct: 64 MDGKELNGRRVSVK 77
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 48.0 bits (109), Expect = 3e-06
Identities = 18/98 (18%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE-SIDKVMA 326
++++GG+ + T+ +L+ G+ GE+ + + + ++G +G+AF+ F++ + + + +
Sbjct: 93 EVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDT 152
Query: 327 AGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIR 440
K++ +A+H ++F+G + + +I+
Sbjct: 153 LNNTDFRGKRIKCSTTQAKH-RLFLGNVPRNWMESDIK 189
Score = 28.3 bits (60), Expect = 2.5
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGE-IESINVKTDP-NTGRSRGFAFIVF 293
+LF+G + + +++ G ++ + + +P N GR+RGFAFI +
Sbjct: 173 RLFLGNVPRNWMESDIKKAANRIGPGVQIVELPKEPQNMGRNRGFAFIEY 222
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 47.6 bits (108), Expect = 4e-06
Identities = 25/66 (37%), Positives = 34/66 (51%)
Frame = +3
Query: 129 PGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 308
P + LFV GLS TT + LR F +GE+ V TD +G S+GF F+ + E
Sbjct: 50 PQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLED 109
Query: 309 IDKVMA 326
K +A
Sbjct: 110 SAKGIA 115
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 47.6 bits (108), Expect = 4e-06
Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Frame = +3
Query: 66 QLNGNAENGGGDSQDHNS--AEAPGRD--DDRKLFVGGLSWETTDKELRDHFGAYGEIES 233
++ E G +QD S A G++ D R ++VG + + T +E++ HF G +
Sbjct: 58 EMQAKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNR 117
Query: 234 INVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNK--KVDPKK 371
+ + D G+ +GFA++ F E++ + + E ++ + KV PK+
Sbjct: 118 VTILMD-KFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKR 164
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 47.6 bits (108), Expect = 4e-06
Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Frame = +3
Query: 66 QLNGNAENGGGDSQDHNS--AEAPGRD--DDRKLFVGGLSWETTDKELRDHFGAYGEIES 233
++ E G +QD S A G++ D R ++VG + + T +E++ HF G +
Sbjct: 58 EMQAKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNR 117
Query: 234 INVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNK--KVDPKK 371
+ + D G+ +GFA++ F E++ + + E ++ + KV PK+
Sbjct: 118 VTILMD-KFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKR 164
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 47.6 bits (108), Expect = 4e-06
Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 14/138 (10%)
Frame = +3
Query: 78 NAENGGGDSQDHNS---AEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKT 248
+ + G DH S + R KLFVG + T++E+R +F +G + + +
Sbjct: 94 SGQKRGYPISDHGSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIK 153
Query: 249 DPNTGRSRGFAFIVFKAPESIDKVMAA---------GEHTINNKKVDPKKAK--ARHGKI 395
D TG+ +G F+ + + D+ + A G + + D ++ + K+
Sbjct: 154 DKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKL 213
Query: 396 FVGGLSSEISDDEIRNFF 449
FVG L+ + ++ E+ F
Sbjct: 214 FVGSLNKQATEKEVEEIF 231
Score = 38.3 bits (85), Expect = 0.002
Identities = 18/53 (33%), Positives = 32/53 (60%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 308
KLFVG L+ + T+KE+ + F +G +E + + D +SRG F+ + + E+
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKET 263
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 47.6 bits (108), Expect = 4e-06
Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 14/138 (10%)
Frame = +3
Query: 78 NAENGGGDSQDHNS---AEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKT 248
+ + G DH S + R KLFVG + T++E+R +F +G + + +
Sbjct: 94 SGQKRGYPISDHGSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIK 153
Query: 249 DPNTGRSRGFAFIVFKAPESIDKVMAA---------GEHTINNKKVDPKKAK--ARHGKI 395
D TG+ +G F+ + + D+ + A G + + D ++ + K+
Sbjct: 154 DKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKL 213
Query: 396 FVGGLSSEISDDEIRNFF 449
FVG L+ + ++ E+ F
Sbjct: 214 FVGSLNKQATEKEVEEIF 231
Score = 38.3 bits (85), Expect = 0.002
Identities = 18/53 (33%), Positives = 32/53 (60%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 308
KLFVG L+ + T+KE+ + F +G +E + + D +SRG F+ + + E+
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKET 263
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 47.2 bits (107), Expect = 5e-06
Identities = 19/73 (26%), Positives = 41/73 (56%)
Frame = +3
Query: 141 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 320
D R +FVG + + T +E++ HF G + + + TD G+ +GFA++ F E++ +
Sbjct: 90 DARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTD-KFGQPKGFAYVEFVEVEAVQEA 148
Query: 321 MAAGEHTINNKKV 359
+ E ++ +++
Sbjct: 149 LQLNESELHGRQL 161
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 47.2 bits (107), Expect = 5e-06
Identities = 23/74 (31%), Positives = 38/74 (51%)
Frame = +3
Query: 96 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRG 275
G S+ + + + L+V GLS TDK+L HF G++ S + +P T SRG
Sbjct: 55 GRSRSRSRGRSEVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRG 114
Query: 276 FAFIVFKAPESIDK 317
FAF+ + + ++
Sbjct: 115 FAFVTMSSLKDAER 128
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 47.2 bits (107), Expect = 5e-06
Identities = 20/59 (33%), Positives = 34/59 (57%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 326
KL+VGG+ +++T+ E+R +F + G I ++ K P G G AFI F + + +A
Sbjct: 162 KLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDTEDGAKRALA 220
Score = 40.3 bits (90), Expect = 6e-04
Identities = 19/74 (25%), Positives = 39/74 (52%)
Frame = +3
Query: 138 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 317
D ++++G L+W+TT++++R F I S+ + + TG +G+A + FK S+
Sbjct: 259 DGYNRVYIGNLAWDTTERDIRKLFSDC-VINSVRLGKNKETGEFKGYAHVDFKDSVSVAI 317
Query: 318 VMAAGEHTINNKKV 359
+ + I + V
Sbjct: 318 ALKLDQQVICGRPV 331
Score = 27.5 bits (58), Expect = 4.4
Identities = 9/20 (45%), Positives = 17/20 (85%)
Frame = +3
Query: 390 KIFVGGLSSEISDDEIRNFF 449
K++VGG+ + ++DEIR++F
Sbjct: 162 KLYVGGIPYQSTEDEIRSYF 181
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 47.2 bits (107), Expect = 5e-06
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Frame = +3
Query: 117 SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESI-NVKTDPNTGRSRGFAFIVF 293
S + D LF+G L + +K L D F A+G I S + DP+TG SRGF FI +
Sbjct: 102 SQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISY 161
Query: 294 KAPESIDKVMAA--GEHTINNK 353
+ E+ D + + G++ N +
Sbjct: 162 DSFEASDAAIESMTGQYLSNRQ 183
>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 817
Score = 46.8 bits (106), Expect = 7e-06
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 6/122 (4%)
Frame = +3
Query: 45 QDITTDNQLNGNAENGG-GDSQDHNSAEA-PGRD----DDRKLFVGGLSWETTDKELRDH 206
Q T N AENG DS + +A P + D+ F+ LS + ++++R
Sbjct: 611 QSATVPATKNVKAENGKTADSDKEETEDAKPLKPKVYRDECTAFISNLSVKAQEEDIRKF 670
Query: 207 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 386
FG G ++SI + +TG+ RG A+ F E + +A KK+ ++ +
Sbjct: 671 FGDDGGVDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNRKMFFGKKISIARSNPKK 730
Query: 387 GK 392
GK
Sbjct: 731 GK 732
>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 816
Score = 46.8 bits (106), Expect = 7e-06
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 6/122 (4%)
Frame = +3
Query: 45 QDITTDNQLNGNAENGG-GDSQDHNSAEA-PGRD----DDRKLFVGGLSWETTDKELRDH 206
Q T N AENG DS + +A P + D+ F+ LS + ++++R
Sbjct: 611 QSATVPATKNVKAENGKTADSDKEETEDAKPLKPKVYRDECTAFISNLSVKAQEEDIRKF 670
Query: 207 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 386
FG G ++SI + +TG+ RG A+ F E + +A KK+ ++ +
Sbjct: 671 FGDDGGVDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNRKMFFGKKISIARSNPKK 730
Query: 387 GK 392
GK
Sbjct: 731 GK 732
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 46.8 bits (106), Expect = 7e-06
Identities = 29/99 (29%), Positives = 50/99 (50%)
Frame = +3
Query: 96 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRG 275
G + + + E+P R L+VGGL+ ++++RD F A+GEIESI + + +
Sbjct: 211 GKAGEMGTLESPEDQSIRTLYVGGLNSRVLEQDIRDQFYAHGEIESIRILAE------KA 264
Query: 276 FAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGK 392
AF+ + E +K A E N V+ ++ K G+
Sbjct: 265 CAFVTYTTREGAEK---AAEELSNRLVVNGQRLKLTWGR 300
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 46.8 bits (106), Expect = 7e-06
Identities = 26/68 (38%), Positives = 36/68 (52%)
Frame = +3
Query: 105 QDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAF 284
QD +E+ ++V L E TD EL+ FG YG+I S V D +G SR F F
Sbjct: 211 QDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGF 269
Query: 285 IVFKAPES 308
+ F +PE+
Sbjct: 270 VNFVSPEA 277
Score = 38.3 bits (85), Expect = 0.002
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 8/119 (6%)
Frame = +3
Query: 117 SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 296
+AEA + L+VG L + L D F + ++ V D T RS G+A++ F
Sbjct: 35 AAEALQTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFA 93
Query: 297 APESIDKVMAAGEHT-INNKKV-------DPKKAKARHGKIFVGGLSSEISDDEIRNFF 449
PE + M + + I ++ + DP + G +F+ L + I + + F
Sbjct: 94 NPEDASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETF 152
Score = 37.1 bits (82), Expect = 0.005
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +3
Query: 153 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 305
L++ L D++L++ F YG + S V + + G SRGF F+ + PE
Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMN-SQGLSRGFGFVAYSNPE 379
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 46.8 bits (106), Expect = 7e-06
Identities = 27/99 (27%), Positives = 52/99 (52%)
Frame = +3
Query: 96 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRG 275
G + + + E+P + + L+VGGL+ ++++RD F A+GEIESI + D +
Sbjct: 211 GKAGEMGTLESPDDESIKTLYVGGLNSRILEQDIRDQFYAHGEIESIRILAD------KA 264
Query: 276 FAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGK 392
AF+ + + E +K A + N ++ ++ K G+
Sbjct: 265 CAFVTYTSREGAEK---AAQELSNRLVINGQRLKLTWGR 300
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 46.4 bits (105), Expect = 9e-06
Identities = 23/73 (31%), Positives = 37/73 (50%)
Frame = +3
Query: 108 DHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFI 287
+ N EA + L+V L +D++L++ F +G + S V DPN G S+G F+
Sbjct: 119 EQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPN-GTSKGSGFV 177
Query: 288 VFKAPESIDKVMA 326
F PE + M+
Sbjct: 178 AFATPEEATEAMS 190
Score = 45.6 bits (103), Expect = 2e-05
Identities = 28/73 (38%), Positives = 42/73 (57%)
Frame = +3
Query: 153 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 332
++V L+ TTD +L++ FG YG+I S V D G+S+GF F+ F E+ D A
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNF---ENADDAARAV 86
Query: 333 EHTINNKKVDPKK 371
E ++N K D K+
Sbjct: 87 E-SLNGHKFDDKE 98
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 46.4 bits (105), Expect = 9e-06
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +3
Query: 138 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID- 314
D K++VG L+ T + L + F G++ S V P T +S GF F+ F + E ++
Sbjct: 174 DSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEA 233
Query: 315 KVMAAGEHTINNKKVDPKKA 374
++A + +K+ KA
Sbjct: 234 AIVALNNSLLEGQKIRVNKA 253
Score = 41.9 bits (94), Expect = 2e-04
Identities = 19/75 (25%), Positives = 40/75 (53%)
Frame = +3
Query: 99 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 278
++++ +A P + R++++G + T+++L +G +E + V D +GRSR F
Sbjct: 60 ETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRF 119
Query: 279 AFIVFKAPESIDKVM 323
F K+ E + V+
Sbjct: 120 GFATMKSVEDANAVV 134
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 46.4 bits (105), Expect = 9e-06
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Frame = +3
Query: 87 NGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTD----KELRDHFGAYGEIESINVKTDP 254
N G ++ N R ++V G S + KELR HF GE+ ++V TD
Sbjct: 459 NERGTPRNSNPGRKGEGSQSRTIYVRGFSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDR 518
Query: 255 NTGRSRGFAFI 287
TG SRGFA+I
Sbjct: 519 ETGASRGFAYI 529
Score = 35.5 bits (78), Expect = 0.017
Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 16/114 (14%)
Frame = +3
Query: 147 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 326
+ LF G LS++ ++ + F GE+ + + + + G +G+ I F +PE K +
Sbjct: 384 KTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSF-DDGSFKGYGHIEFASPEEAQKALE 442
Query: 327 AG---------EHTINNKKVDPKKAK-ARHGK------IFVGGLSSEISDDEIR 440
+ N++ P+ + R G+ I+V G SS + +DEI+
Sbjct: 443 MNGKLLLGRDVRLDLANERGTPRNSNPGRKGEGSQSRTIYVRGFSSSLGEDEIK 496
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 46.4 bits (105), Expect = 9e-06
Identities = 28/74 (37%), Positives = 37/74 (50%)
Frame = +3
Query: 102 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 281
++D +A A G D ++V L TD L F YG + S+ V D GRSRGF
Sbjct: 188 NKDERAAMA-GNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRD-GMGRSRGFG 245
Query: 282 FIVFKAPESIDKVM 323
F+ F PE+ K M
Sbjct: 246 FVNFCNPENAKKAM 259
Score = 41.1 bits (92), Expect = 3e-04
Identities = 21/47 (44%), Positives = 27/47 (57%)
Frame = +3
Query: 153 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 293
L+V LS + LR+ FG YG+I S V N GRS+GF F+ F
Sbjct: 306 LYVKNLSESMNETRLREIFGCYGQIVSAKVMCHEN-GRSKGFGFVCF 351
Score = 40.3 bits (90), Expect = 6e-04
Identities = 21/63 (33%), Positives = 35/63 (55%)
Frame = +3
Query: 153 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 332
L+VG LS + T+K+L D F + S+++ + TG+S +A+I F +P S M
Sbjct: 23 LYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRL 82
Query: 333 EHT 341
H+
Sbjct: 83 NHS 85
Score = 27.1 bits (57), Expect = 5.9
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +3
Query: 153 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 308
L+V L T L F +G I S V + G+S+GF F+ F +S
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVVEE--NGQSKGFGFVQFDTEQS 163
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 46.4 bits (105), Expect = 9e-06
Identities = 25/114 (21%), Positives = 54/114 (47%)
Frame = +3
Query: 99 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 278
+ + H+ + + ++FVG L ++++L+ FG GE+ + + +P T +S+G
Sbjct: 198 EEEHHDVLHERRKRKEFEIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGS 257
Query: 279 AFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIR 440
AF+ F E + + + + N K A + +FVG + + + +R
Sbjct: 258 AFLRFATVEQAKRAVKELKSPMINGKKCGVTASQDNDTLFVGNICKIWTPEALR 311
Score = 33.5 bits (73), Expect = 0.067
Identities = 20/79 (25%), Positives = 39/79 (49%)
Frame = +3
Query: 147 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 326
+ +F+ GL ++ +RD YG++E + + + + R + F F+ F E+ V
Sbjct: 391 KTIFIDGLLPSWNEERVRDLLKPYGKLEKVELARNMPSARRKDFGFVTFDTHEA--AVSC 448
Query: 327 AGEHTINNKKVDPKKAKAR 383
A INN ++ + KA+
Sbjct: 449 A--KFINNSELGEGEDKAK 465
Score = 29.5 bits (63), Expect = 1.1
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +3
Query: 141 DDRKLFVGGLSWETTDKELRDHFGAYG--EIESINVKTDPNT-GRSRGFAFIVFKA 299
D+ LFVG + T + LR+ YG ++ I + D N +RG+AF+ F +
Sbjct: 292 DNDTLFVGNICKIWTPEALREKLKHYGVENMDDITLVEDSNNVNMNRGYAFLEFSS 347
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 46.4 bits (105), Expect = 9e-06
Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 4/55 (7%)
Frame = +3
Query: 141 DDRKLFVGG----LSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 293
D++K+FV G LS + LR+HF + GEI++++V D +TG S+G A++ F
Sbjct: 399 DEKKIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEF 453
Score = 35.1 bits (77), Expect = 0.022
Identities = 16/65 (24%), Positives = 28/65 (43%)
Frame = +3
Query: 129 PGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 308
P + LF LS+ ++ + F GE+ + T+ + G RGF + F + E
Sbjct: 291 PAAGGSKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEE 350
Query: 309 IDKVM 323
K +
Sbjct: 351 AQKAL 355
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 46.0 bits (104), Expect = 1e-05
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Frame = +3
Query: 129 PGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF----- 293
P D L V +++ TT +L F YG++ + + D TG SRGFAF+ +
Sbjct: 10 PDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDE 69
Query: 294 --KAPESID-KVMAAGEHTINNKKVDPKKAKARHGKI 395
KA E +D +V+ E T+ K P K G++
Sbjct: 70 AHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRV 106
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 46.0 bits (104), Expect = 1e-05
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Frame = +3
Query: 129 PGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF----- 293
P D L V +++ TT +L F YG++ + + D TG SRGFAF+ +
Sbjct: 10 PDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDE 69
Query: 294 --KAPESID-KVMAAGEHTINNKKVDPKKAKARHGKI 395
KA E +D +V+ E T+ K P K G++
Sbjct: 70 AHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRV 106
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 46.0 bits (104), Expect = 1e-05
Identities = 21/55 (38%), Positives = 32/55 (58%)
Frame = +3
Query: 153 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 317
L+V GLS TDK+L HF G++ S + +P T SRGFAF+ + + ++
Sbjct: 73 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAER 127
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 46.0 bits (104), Expect = 1e-05
Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = +3
Query: 114 NSAEAPGRDDDRK----LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 281
N A A G+ +D +FVG LS E TD L F + V D TGRSRGF
Sbjct: 129 NWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFG 188
Query: 282 FIVFK 296
F+ F+
Sbjct: 189 FVSFR 193
Score = 31.9 bits (69), Expect = 0.21
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 10/117 (8%)
Frame = +3
Query: 129 PGRDDD--RKLFVGGLSWETTDKELRDHFGAYGEIESIN-VKTDPNTGRSRGFAFIVFKA 299
PG D R ++VG + + T+ L++ F + G +ES ++ D + S GF +
Sbjct: 51 PGFDPSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKS---SYGFVHYFDRR 107
Query: 300 PESIDKVMAAGEHTINNK-KVD------PKKAKARHGKIFVGGLSSEISDDEIRNFF 449
++ + G H KV+ ++ + H IFVG LS E++D + F
Sbjct: 108 SAALAILSLNGRHLFGQPIKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSF 164
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 46.0 bits (104), Expect = 1e-05
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Frame = +3
Query: 123 EAPGRDD-DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK- 296
E DD +R LF+ L ++ T +E++ F +GE+ES+++ T R G AF+ FK
Sbjct: 552 ETQDNDDFERTLFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKFKT 611
Query: 297 APESIDKVMAA 329
A S+ + AA
Sbjct: 612 ADASVAAISAA 622
Score = 39.1 bits (87), Expect = 0.001
Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Frame = +3
Query: 93 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 272
G + ++ E + V GL + T+ +L + F G + + T+ + R
Sbjct: 2 GKNKRERKDGEEKSPHAAATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHR 61
Query: 273 GFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKAR 383
GFAF+ F E +++ + T+ +++ K+A R
Sbjct: 62 GFAFVKFALQEDVNRAIELKNGSTVGGRRITVKQAAHR 99
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 293
KL + L ++ +++ F A G + + + + TG +GFAF+ F
Sbjct: 332 KLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKF 379
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 45.6 bits (103), Expect = 2e-05
Identities = 18/60 (30%), Positives = 33/60 (55%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 329
+++VG L W+ + L F +G++ V D TGRSRGF F+ + +++ ++A
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Score = 44.4 bits (100), Expect = 4e-05
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 12/126 (9%)
Frame = +3
Query: 42 AQDITTDNQLNGNAENG----GGDSQDHNS-------AEAPGRDDDRKLFVGGLSWETTD 188
+QD++ ++ G+A G G +S+ S AE P ++ KLFVG L+++
Sbjct: 104 SQDVSEGDESEGDASEGDVSEGDESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNS 163
Query: 189 KELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA-PESIDKVMAAGEHTINNKKVDP 365
+ L F G +E V + T +SRGF F+ + E+ V + +N + +
Sbjct: 164 QALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTV 223
Query: 366 KKAKAR 383
KA R
Sbjct: 224 NKAAPR 229
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 45.6 bits (103), Expect = 2e-05
Identities = 22/58 (37%), Positives = 32/58 (55%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 323
+LFV LS TTD+ LR F +G+I+ + D T R +GF FI F + + K +
Sbjct: 8 QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 45.6 bits (103), Expect = 2e-05
Identities = 19/57 (33%), Positives = 34/57 (59%)
Frame = +3
Query: 153 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 323
LFV G+S+ +T++ L F YG++ ++V D R +GFA++ F + E +K +
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 45.2 bits (102), Expect = 2e-05
Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 2/127 (1%)
Frame = +3
Query: 9 VILVMANNDNFAQDIT-TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETT 185
V+ ++ N+A++ D + G + + + P ++ KLFVG L ++
Sbjct: 66 VVTFVSQTSNWAEEEEGEDGSIGGTSVTVDESFESEDGVGFPEPPEEAKLFVGNLPYDVD 125
Query: 186 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVD 362
+ L F G +E V + +T +SRGF F+ E +K V +N +++
Sbjct: 126 SQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLT 185
Query: 363 PKKAKAR 383
+A R
Sbjct: 186 VNRAAPR 192
Score = 45.2 bits (102), Expect = 2e-05
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 329
+++VG L W+ L F +G++ V +D TGRSRGF F+ ++ +AA
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 45.2 bits (102), Expect = 2e-05
Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 8/112 (7%)
Frame = +3
Query: 138 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 317
++ KLFVG + ++ +L F + ++ +N+ D T SRG F++ + E DK
Sbjct: 15 EESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADK 74
Query: 318 VMAA--------GEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFF 449
++ A G +++ K + + K+FVG L +S+ E+++ F
Sbjct: 75 LVNACHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLF 126
Score = 33.5 bits (73), Expect = 0.067
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +3
Query: 144 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 323
+ KLFVG L ++ E++ F YG I+ + + S+G AF+ ++ E M
Sbjct: 105 EHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQ-TSKGCAFLKYETKEQAVSAM 163
Query: 324 AA--GEHTINNKKV 359
+ G+H + V
Sbjct: 164 ESINGKHKMEGSTV 177
Score = 27.5 bits (58), Expect = 4.4
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +3
Query: 153 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 293
LF+ + E D+EL F ++G + S V D TG S+ F + F
Sbjct: 350 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGKLSF 396
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 45.2 bits (102), Expect = 2e-05
Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 8/112 (7%)
Frame = +3
Query: 138 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 317
++ KLFVG + ++ +L F + ++ +N+ D T SRG F++ + E DK
Sbjct: 15 EESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADK 74
Query: 318 VMAA--------GEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFF 449
++ A G +++ K + + K+FVG L +S+ E+++ F
Sbjct: 75 LVNACHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLF 126
Score = 33.5 bits (73), Expect = 0.067
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +3
Query: 144 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 323
+ KLFVG L ++ E++ F YG I+ + + S+G AF+ ++ E M
Sbjct: 105 EHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQ-TSKGCAFLKYETKEQAVSAM 163
Query: 324 AA--GEHTINNKKV 359
+ G+H + V
Sbjct: 164 ESINGKHKMEGSTV 177
Score = 31.5 bits (68), Expect = 0.27
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +3
Query: 153 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV--MA 326
LF+ + E D+EL F ++G + S V D TG S+ F F+ + + + M
Sbjct: 351 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMM 410
Query: 327 AGEHTINNKKV 359
G H + KK+
Sbjct: 411 NGRH-LGGKKL 420
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 44.8 bits (101), Expect = 3e-05
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 144 DRKLFVGGLSWETTDKELRDHF-GAYGEIESINVKTDPNTGRSRGFAFIVF 293
D +FVG L+ E TD L D F YG ++ V D TGRS+G+ F+ F
Sbjct: 153 DHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRF 203
Score = 37.5 bits (83), Expect = 0.004
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +3
Query: 105 QDHNSAEAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 281
Q+ A A D ++ +FVGGL TD EL+ FG +GE+ ++VK P G+ GF
Sbjct: 245 QNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGEL--LHVKIPP--GKRCGFV 300
Query: 282 FIVFKA 299
KA
Sbjct: 301 QYANKA 306
Score = 29.5 bits (63), Expect = 1.1
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +3
Query: 393 IFVGGLSSEISDDEIRNFF 449
IFVGGL + ++DDE+++ F
Sbjct: 262 IFVGGLDANVTDDELKSIF 280
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 44.8 bits (101), Expect = 3e-05
Identities = 20/61 (32%), Positives = 39/61 (63%)
Frame = +3
Query: 111 HNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIV 290
+N A G D + LFV L++E+++ +++ F +YG I+ +++ TD T + +G+AFI
Sbjct: 127 NNDPNATG-DPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIE 185
Query: 291 F 293
+
Sbjct: 186 Y 186
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 44.8 bits (101), Expect = 3e-05
Identities = 30/75 (40%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Frame = +3
Query: 96 GDSQDHNSAEAPGRDDDRK----LFVGGLSWETTDKELRDHFGAYGEIESI----NVKTD 251
G N A A G+ +D +FVG LS E TD L D F A+ S V D
Sbjct: 127 GQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWD 186
Query: 252 PNTGRSRGFAFIVFK 296
TGRSRGF F+ F+
Sbjct: 187 QKTGRSRGFGFVSFR 201
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 44.4 bits (100), Expect = 4e-05
Identities = 20/66 (30%), Positives = 38/66 (57%)
Frame = +3
Query: 132 GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 311
G + ++FVGGL + T+ ++R+ ++G ++ ++ D TG S+G+AF V++
Sbjct: 354 GLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVT 413
Query: 312 DKVMAA 329
D AA
Sbjct: 414 DIACAA 419
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 44.4 bits (100), Expect = 4e-05
Identities = 20/66 (30%), Positives = 38/66 (57%)
Frame = +3
Query: 132 GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 311
G + ++FVGGL + T+ ++R+ ++G ++ ++ D TG S+G+AF V++
Sbjct: 354 GLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVT 413
Query: 312 DKVMAA 329
D AA
Sbjct: 414 DIACAA 419
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 44.4 bits (100), Expect = 4e-05
Identities = 20/66 (30%), Positives = 38/66 (57%)
Frame = +3
Query: 132 GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 311
G + ++FVGGL + T+ ++R+ ++G ++ ++ D TG S+G+AF V++
Sbjct: 354 GLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVT 413
Query: 312 DKVMAA 329
D AA
Sbjct: 414 DIACAA 419
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 44.4 bits (100), Expect = 4e-05
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +3
Query: 156 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVM 323
FV GL +T +K+L D F +G + + D +TG+SR F F+ F+ +S+ D +M
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIM 66
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 44.4 bits (100), Expect = 4e-05
Identities = 27/65 (41%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = +3
Query: 114 NSAEAPGRDDDRK----LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 281
N A A G+ +D +FVG LS E TD L F Y V D TGRSRGF
Sbjct: 124 NWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFG 183
Query: 282 FIVFK 296
F+ F+
Sbjct: 184 FVSFR 188
Score = 31.1 bits (67), Expect = 0.36
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 9/109 (8%)
Frame = +3
Query: 129 PGRDDD--RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 302
PG D R ++VG + + T+ L++ F G +ES + + S GF +
Sbjct: 46 PGFDPSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKS--SYGFVHYFDRRS 103
Query: 303 ESIDKVMAAGEHTINNK-KVD------PKKAKARHGKIFVGGLSSEISD 428
+ + G H KV+ ++ + H IFVG LS E++D
Sbjct: 104 AGLAILSLNGRHLFGQPIKVNWAYASGQREDTSSHFNIFVGDLSPEVTD 152
Score = 29.9 bits (64), Expect = 0.83
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +3
Query: 99 DSQDHNSAEAPGRDDD-RKLFVGGLSWETTDKELRDHFGAYGE--IESINVKTDPNTG 263
D +D + EAP + ++VG L+ E + +L HF + G IE + V+ D G
Sbjct: 243 DGKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRDKGFG 300
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 44.0 bits (99), Expect = 5e-05
Identities = 18/54 (33%), Positives = 33/54 (61%)
Frame = +3
Query: 147 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 308
R +FVG + ++ T+++LR+ G G + S + TD TG+ +G+ F +K E+
Sbjct: 9 RCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEET 62
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 43.6 bits (98), Expect = 6e-05
Identities = 20/64 (31%), Positives = 35/64 (54%)
Frame = +3
Query: 153 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 332
LFVG LS TT+ LR+ YG I+++ + TG SRG+ F+ ++ + + +
Sbjct: 66 LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDA 125
Query: 333 EHTI 344
H++
Sbjct: 126 HHSL 129
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 43.6 bits (98), Expect = 6e-05
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Frame = +3
Query: 102 SQDHNSAEAPGRDDDRK------LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 263
S+D S + GR ++ + V G+ ET ++++ + FG +GEI+++N+ D +G
Sbjct: 74 SRDFESLGSDGRPGPQRSVEGWIILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSG 133
Query: 264 RSRGFAFIVFKAPESIDKVMAA 329
+G+A I ++ E ++A
Sbjct: 134 YVKGYALIEYEKKEEAQSAISA 155
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 42.7 bits (96), Expect = 1e-04
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +3
Query: 153 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP-ESIDKV 320
++V ++ T++ELR HF G I S + D G+S+GF F+ F P E+ID V
Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCD-EKGKSKGFGFVCFSTPEEAIDAV 361
Score = 41.1 bits (92), Expect = 3e-04
Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 12/123 (9%)
Frame = +3
Query: 117 SAEAPG--RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIV 290
S AP R+ +FV L T+ L+D F +G I S V T + G+SRG+ F+
Sbjct: 100 SVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLED-GKSRGYGFVQ 158
Query: 291 FK-------APESIDKVMAAGEHTINN---KKVDPKKAKARHGKIFVGGLSSEISDDEIR 440
F+ A ++++ + A + KK D K + ++ +++ L +++S+D +R
Sbjct: 159 FEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLR 218
Query: 441 NFF 449
F
Sbjct: 219 EKF 221
Score = 31.1 bits (67), Expect = 0.36
Identities = 22/107 (20%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Frame = +3
Query: 153 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 332
L+VG L T+ L D F + + S+ + D ++GRS + + F + + + +
Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85
Query: 333 EHTINNKKV--------DPKKAKARHGKIFVGGLSSEISDDEIRNFF 449
+++ N K+ P + G +FV L +++ +++ F
Sbjct: 86 NNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMF 132
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 42.3 bits (95), Expect = 1e-04
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 11/106 (10%)
Frame = +3
Query: 18 VMANNDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAP-----------GRDDDRKLFVG 164
V+ NN+N + + +NG G G + N A G LFVG
Sbjct: 182 VLGNNENLMRPVM--GNVNGGIPPGPGSNMVGNGANIAMPGVVGGGTGGGGGGGAFLFVG 239
Query: 165 GLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 302
L W TTD EL YG ++ + + +G+S+G+ + F P
Sbjct: 240 DLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDP 285
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 42.3 bits (95), Expect = 1e-04
Identities = 26/79 (32%), Positives = 41/79 (51%)
Frame = +3
Query: 102 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 281
+QDH SA + V GLS ++T+++L +G + + V + N+G SRGFA
Sbjct: 288 NQDHFSATPSAT-----VVVKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFA 342
Query: 282 FIVFKAPESIDKVMAAGEH 338
FI F ++ +M EH
Sbjct: 343 FIDFPTVDAARTMMDRIEH 361
Score = 40.3 bits (90), Expect = 6e-04
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Frame = +3
Query: 153 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 332
L V GL + ++ LR F + I+ + + D T SRGFAF+ F + E K + A
Sbjct: 460 LVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEAT 519
Query: 333 EHTI---NNKKVDPKKAKARHG 389
T N K + AK+ HG
Sbjct: 520 NRTALERNGKILRVAYAKSVHG 541
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 42.3 bits (95), Expect = 1e-04
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +3
Query: 147 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 326
R +FV + + T L HF +GE+ + TDP TG+ G A+I F E+ + ++
Sbjct: 516 RTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENALS 575
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 42.3 bits (95), Expect = 1e-04
Identities = 20/63 (31%), Positives = 34/63 (53%)
Frame = +3
Query: 135 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 314
R+D+ + V LS +T + +L + F +G + + V D TG SRGF F+ F + E
Sbjct: 209 RNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQ 268
Query: 315 KVM 323
+ +
Sbjct: 269 RAI 271
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 42.3 bits (95), Expect = 1e-04
Identities = 25/61 (40%), Positives = 39/61 (63%)
Frame = +3
Query: 153 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 332
L+VG L+ ETT+ +L + FG YG+I+ I V + SRGFAFI ++ +++ +AA
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITVYS------SRGFAFIYYR---HVEEAVAAK 70
Query: 333 E 335
E
Sbjct: 71 E 71
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 42.3 bits (95), Expect = 1e-04
Identities = 20/68 (29%), Positives = 36/68 (52%)
Frame = +3
Query: 102 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 281
SQ+ + E + RKLFV L W + ++ + FG G + ++ + + G++RGFA
Sbjct: 80 SQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKD-GKNRGFA 138
Query: 282 FIVFKAPE 305
F+ + E
Sbjct: 139 FVTMASGE 146
Score = 38.7 bits (86), Expect = 0.002
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +3
Query: 126 APGRDDDRKLFVGGLSWETTDKELRDHFGA--YGEIESINVKTDPNTGRSRGFAFIVFKA 299
APG D KL+V L+W+ LR+ F A + + + V DP GRS G+ F+ F
Sbjct: 188 APG-DTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPE-GRSSGYGFVSFAT 245
Query: 300 PESIDKVM 323
E + +
Sbjct: 246 REEAENAI 253
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 41.9 bits (94), Expect = 2e-04
Identities = 18/43 (41%), Positives = 28/43 (65%)
Frame = +3
Query: 123 EAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTD 251
E P + + L+VGGL+ ++++ DHF AYGE+ESI V +
Sbjct: 217 EPPEDESIKTLYVGGLNSRIFEQDIHDHFYAYGEMESIRVMAE 259
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 41.9 bits (94), Expect = 2e-04
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 144 DRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 320
D +FVG LS + +D L + F Y +++ V D NTGRS+G+ F+ F K
Sbjct: 196 DLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 255
Query: 321 M 323
M
Sbjct: 256 M 256
Score = 35.5 bits (78), Expect = 0.017
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 16/119 (13%)
Frame = +3
Query: 141 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKT--DPNTGRSRGFAFIVFKAPESID 314
+++ ++VG L + L F + E E ++VK + N G S G+ F+ F++ + D
Sbjct: 99 ENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVAD 158
Query: 315 KVMAAGEHTINNKKVDP-----------KKAKARHG---KIFVGGLSSEISDDEIRNFF 449
KV+ T P +K +G IFVG LS ++SD+ + F
Sbjct: 159 KVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETF 217
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 41.9 bits (94), Expect = 2e-04
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 144 DRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 320
D +FVG LS + +D L + F Y +++ V D NTGRS+G+ F+ F K
Sbjct: 196 DLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 255
Query: 321 M 323
M
Sbjct: 256 M 256
Score = 37.5 bits (83), Expect = 0.004
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Frame = +3
Query: 57 TDNQLNGNAENGGGDSQDHNSAEAPGRDD-DRKLFVGGLSWETTDKELRDHFGAYGEIES 233
T + NG + GG + + P D + +FVGGL TD++L+ F +GEI S
Sbjct: 275 TPRKTNGYQQQGG--YMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVS 332
Query: 234 INVKTDPNTGRSRGFAFIVFK--APESIDKV 320
+ + G+ GF V + A E+++K+
Sbjct: 333 VKIP----VGKGCGFVQFVNRPNAEEALEKL 359
Score = 35.5 bits (78), Expect = 0.017
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 16/119 (13%)
Frame = +3
Query: 141 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKT--DPNTGRSRGFAFIVFKAPESID 314
+++ ++VG L + L F + E E ++VK + N G S G+ F+ F++ + D
Sbjct: 99 ENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVAD 158
Query: 315 KVMAAGEHTINNKKVDP-----------KKAKARHG---KIFVGGLSSEISDDEIRNFF 449
KV+ T P +K +G IFVG LS ++SD+ + F
Sbjct: 159 KVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETF 217
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 41.9 bits (94), Expect = 2e-04
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 10/120 (8%)
Frame = +3
Query: 120 AEAPGRDDDR-KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 296
AE +++R KLFVG + T+ +L F + + +N+ + T RG F+
Sbjct: 2 AEETMENEERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCP 61
Query: 297 APESIDKV---------MAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFF 449
E DKV + + K D + + H K+FVG L +S+ E+++ F
Sbjct: 62 TREDADKVINSFHNKKTLPGASSPLQVKYADGELERLEH-KLFVGMLPKNVSETEVQSLF 120
Score = 34.7 bits (76), Expect = 0.029
Identities = 22/77 (28%), Positives = 38/77 (49%)
Frame = +3
Query: 153 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 332
LF+ + E D+EL F +G++ S V D TG S+ F FI + + + +
Sbjct: 332 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAI--- 388
Query: 333 EHTINNKKVDPKKAKAR 383
+T+N ++ KK K +
Sbjct: 389 -NTMNGCQLSGKKLKVQ 404
Score = 32.3 bits (70), Expect = 0.16
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +3
Query: 144 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 323
+ KLFVG L ++ E++ F YG I+ + + + S+G F+ +++ E M
Sbjct: 99 EHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRG-SLQTSKGCLFLKYESKEQAVAAM 157
Query: 324 AA--GEHTINNKKV 359
A G H + V
Sbjct: 158 EALNGRHIMEGANV 171
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 41.5 bits (93), Expect = 3e-04
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +3
Query: 144 DRKLFVGGLSWETTDKELRDHF-GAYGEIESINVKTDPNTGRSRGFAFIVF 293
D +FVG L+ + +D L + F G Y ++ V D NTGRS+G+ F+ F
Sbjct: 212 DLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRF 262
Score = 37.1 bits (82), Expect = 0.005
Identities = 22/96 (22%), Positives = 43/96 (44%)
Frame = +3
Query: 66 QLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVK 245
Q NG+ N + + G ++ +FVGGL + T+++L F +GE+ S+ +
Sbjct: 300 QQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIP 359
Query: 246 TDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNK 353
+G F+ F +S ++ + T+ K
Sbjct: 360 V------GKGCGFVQFANRQSAEEAIGNLNGTVIGK 389
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 41.5 bits (93), Expect = 3e-04
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 14/113 (12%)
Frame = +3
Query: 153 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES----IDKV 320
+F+ L +K L + F ++G I S V D TGRS+G+ F+ F+ ES IDK+
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 321 --MAAGE------HTINNKK--VDPKKAKARHGKIFVGGLSSEISDDEIRNFF 449
M + H I ++ D R ++V L EI +DE+R F
Sbjct: 197 NGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTF 249
Score = 39.5 bits (88), Expect = 0.001
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +3
Query: 153 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 305
L++ L D++L++ F YG + S V +P G SRGF F+ + PE
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPE 383
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 40.7 bits (91), Expect = 4e-04
Identities = 18/54 (33%), Positives = 33/54 (61%)
Frame = +3
Query: 153 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 314
+++G +S+ TT+++L + F GEI+ I + D NT GF F++F + E +
Sbjct: 36 VYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTE 89
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 40.3 bits (90), Expect = 6e-04
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Frame = +3
Query: 138 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 317
DD ++VGGL ++ T++ +R F YG + ++ + D + R + + F+ F S D
Sbjct: 4 DDGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSV-RGKCYGFVTFSNRRSADD 62
Query: 318 VMAAGE-HTINNKKVDPKKAKARHGKIFVG 404
+ + +I + V R G++ G
Sbjct: 63 AIEDMDGKSIGGRAVRVNDVTTRGGRMNPG 92
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 40.3 bits (90), Expect = 6e-04
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 144 DRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 320
D +FVG L+ + +D L + F Y +++ V D NTGRS+G+ F+ F K
Sbjct: 198 DLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 257
Query: 321 M 323
M
Sbjct: 258 M 258
Score = 37.5 bits (83), Expect = 0.004
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Frame = +3
Query: 57 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESI 236
T + NG + GG + G + +FVGGL TD++L+ F +GEI S+
Sbjct: 277 TPRKTNGYQQQGGY-MPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSV 335
Query: 237 NVKTDPNTGRSRGFAFIVFK--APESIDKV 320
+ G+ GF V + A E+++K+
Sbjct: 336 KIP----VGKGCGFVQFVNRPNAEEALEKL 361
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 39.9 bits (89), Expect = 8e-04
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +3
Query: 108 DHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAF 284
+ AE P + +FVG L+ + TD L + F A Y ++ V D TGRS+G+ F
Sbjct: 164 ERRQAEGP----EHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGF 219
Query: 285 IVFKAPES 308
+ F A ES
Sbjct: 220 VRF-ADES 226
Score = 28.3 bits (60), Expect = 2.5
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +3
Query: 153 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 263
+FVG + T+ +L+ FG +GE+ + + G
Sbjct: 280 IFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCG 316
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 39.9 bits (89), Expect = 8e-04
Identities = 28/97 (28%), Positives = 42/97 (43%)
Frame = +3
Query: 93 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 272
G +D +E P ++D +LF G L E D L F + V D TG+++
Sbjct: 121 GQSWEDPTLSEWP--ENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTK 178
Query: 273 GFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 383
G+ F+ F P +AA +N K V + K R
Sbjct: 179 GYGFVSFLNPAD----LAAALKEMNGKYVGNRPIKLR 211
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 39.5 bits (88), Expect = 0.001
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Frame = +3
Query: 138 DDDRKLFVGGLSWETTDKELRDHF----GAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 305
D R +F+G L ++ D+E+ F IE++ V DP+ +G A+++FK E
Sbjct: 280 DPKRTVFMGNLPFDVKDEEVYQLFTGKSNLENSIEAVRVIRDPHLNIGKGIAYVLFKTRE 339
Query: 306 SIDKVMAAGEHTINNKKVDPKKAK 377
+ + V+ G + +++ + K
Sbjct: 340 AANLVLKKGYLKLRERELRISRVK 363
Score = 33.9 bits (74), Expect = 0.051
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Frame = +3
Query: 132 GRDDDRKL----FVGGLSWETTDKELRDHFGAYGEIESINVKTDP--NTGRSRGFAFIVF 293
G DD+ KL FVG L + K + F +GE+ES+ +++ P ++ R+R A ++
Sbjct: 162 GFDDESKLLRTVFVGNLPLKVKKKVILKEFSKFGEVESVRIRSVPIVDSKRTRKGAIMLK 221
Query: 294 KAPESIDKVMA 326
+ E V A
Sbjct: 222 QINEKASSVHA 232
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = +3
Query: 96 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRG 275
G + ++ R D+ + V LS +T +L + F +G + +V D T SRG
Sbjct: 157 GADRKAGGSDMRSRHDENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRG 216
Query: 276 FAFIVFKAPESIDKVM 323
F F+ F + E + +
Sbjct: 217 FGFVSFVSREDAQRAI 232
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 39.5 bits (88), Expect = 0.001
Identities = 18/66 (27%), Positives = 35/66 (53%)
Frame = +3
Query: 153 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 332
L+V L + T+ ++ F +G++ + V D +T +SRG AF+++ + E K +
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118
Query: 333 EHTINN 350
+ I N
Sbjct: 119 DAKILN 124
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 39.5 bits (88), Expect = 0.001
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +3
Query: 153 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 293
LFVG L W TTD E+ YG ++ I + +G+S+G+ + F
Sbjct: 204 LFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEF 250
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 39.1 bits (87), Expect = 0.001
Identities = 22/81 (27%), Positives = 37/81 (45%)
Frame = +3
Query: 102 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 281
S+DH S+ G L + L + +LRD F +G ++ I + + TG RGF
Sbjct: 38 SRDHESSGPSG------LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFG 91
Query: 282 FIVFKAPESIDKVMAAGEHTI 344
F+ ++ E + M H +
Sbjct: 92 FVKYRYAEDAAEAMKRMNHKV 112
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 39.1 bits (87), Expect = 0.001
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 305
K+ V L + T++ L+ F A+GEI + + D RS+G+AFI F + +
Sbjct: 41 KIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQD 92
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 39.1 bits (87), Expect = 0.001
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Frame = +3
Query: 90 GGGDSQDHNSAEAPGRDDDR--KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 263
GG + S A D KL+V +S T+ ++R F YG + I + D TG
Sbjct: 89 GGSSLRKRRSQSATDNADGSIAKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTG 148
Query: 264 RSRGFAFIVFKAPESIDKVMAA 329
+ FI +K E + +AA
Sbjct: 149 ERAAYCFIKYKKVEEGNAAIAA 170
Score = 37.1 bits (82), Expect = 0.005
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = +3
Query: 141 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 305
D+ KL+V L+ +TT E+ + F YG IE I + D + RG+AF+ F E
Sbjct: 205 DNPKLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALD-DMKICRGYAFVQFSCKE 258
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 38.7 bits (86), Expect = 0.002
Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
Frame = +3
Query: 93 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 272
GG ++ P ++ L++G + + E+ F +G ++ + V + TG+S+
Sbjct: 42 GGPARKAPVTTPPLQNKATVLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSK 101
Query: 273 GFAFIVFKAPESIDKVMAAG--------EHTINNKKVDPKKAK 377
F FI F+ PE + +AAG EH + ++P+ K
Sbjct: 102 HFGFIQFEDPEVAE--IAAGAMNDYLLMEHMLKVHVIEPENVK 142
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 38.3 bits (85), Expect = 0.002
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +3
Query: 102 SQDHNSAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 278
S+DH S + G + KL++ L + ++++++ F GE++ V D +GRS+G
Sbjct: 70 SEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGT 128
Query: 279 AFIVF 293
A +V+
Sbjct: 129 AEVVY 133
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 38.3 bits (85), Expect = 0.002
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +3
Query: 102 SQDHNSAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 278
S+DH S + G + KL++ L + ++++++ F GE++ V D +GRS+G
Sbjct: 6 SEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGT 64
Query: 279 AFIVF 293
A +V+
Sbjct: 65 AEVVY 69
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 38.3 bits (85), Expect = 0.002
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +3
Query: 102 SQDHNSAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 278
S+DH S + G + KL++ L + ++++++ F GE++ V D +GRS+G
Sbjct: 72 SEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGT 130
Query: 279 AFIVF 293
A +V+
Sbjct: 131 AEVVY 135
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 37.5 bits (83), Expect = 0.004
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +3
Query: 147 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 314
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F+ D
Sbjct: 7 RTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPP---RPPGYAFVEFEDARDAD 59
Score = 29.1 bits (62), Expect = 1.5
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +3
Query: 75 GNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEI 227
G GGGD P R + ++ V GL + ++L+DH GE+
Sbjct: 98 GRGGRGGGDGGGRE--RGPSRRSEYRVVVSGLPSSASWQDLKDHMRKGGEV 146
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 37.5 bits (83), Expect = 0.004
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +3
Query: 147 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 314
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F+ D
Sbjct: 7 RTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPP---RPPGYAFVEFEDARDAD 59
Score = 29.1 bits (62), Expect = 1.5
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +3
Query: 75 GNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEI 227
G GGGD P R + ++ V GL + ++L+DH GE+
Sbjct: 98 GRGGRGGGDGGGRE--RGPSRRSEYRVVVSGLPSSASWQDLKDHMRKGGEV 146
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 37.5 bits (83), Expect = 0.004
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 28/133 (21%)
Frame = +3
Query: 135 RDD--DRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPE 305
RDD D +FVG L+ + TD L + F A Y ++ V D TGR++G+ F+ F
Sbjct: 149 RDDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDES 208
Query: 306 SIDKVM-----------------AAGEHTINNKKVDPKKAKA--------RHGKIFVGGL 410
+ M AA + + ++ + + A + +FVGGL
Sbjct: 209 EQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGL 268
Query: 411 SSEISDDEIRNFF 449
+ ++DD ++N F
Sbjct: 269 DASVTDDHLKNVF 281
Score = 35.1 bits (77), Expect = 0.022
Identities = 22/81 (27%), Positives = 38/81 (46%)
Frame = +3
Query: 117 SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 296
S + D+ R L++G L + + L F GE+ S V + TG+ G+ FI F
Sbjct: 52 SVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFA 111
Query: 297 APESIDKVMAAGEHTINNKKV 359
+ + ++V+ T NN +
Sbjct: 112 SHAAAERVL----QTFNNAPI 128
Score = 33.1 bits (72), Expect = 0.089
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +3
Query: 90 GGGDSQDHNSAEAPGRDDDRK--LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 263
G DS ++A +D +FVGGL TD L++ F YGEI + + G
Sbjct: 240 GQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCG 299
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 37.5 bits (83), Expect = 0.004
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 28/133 (21%)
Frame = +3
Query: 135 RDD--DRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPE 305
RDD D +FVG L+ + TD L + F A Y ++ V D TGR++G+ F+ F
Sbjct: 149 RDDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDES 208
Query: 306 SIDKVM-----------------AAGEHTINNKKVDPKKAKA--------RHGKIFVGGL 410
+ M AA + + ++ + + A + +FVGGL
Sbjct: 209 EQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGL 268
Query: 411 SSEISDDEIRNFF 449
+ ++DD ++N F
Sbjct: 269 DASVTDDHLKNVF 281
Score = 35.1 bits (77), Expect = 0.022
Identities = 22/81 (27%), Positives = 38/81 (46%)
Frame = +3
Query: 117 SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 296
S + D+ R L++G L + + L F GE+ S V + TG+ G+ FI F
Sbjct: 52 SVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFA 111
Query: 297 APESIDKVMAAGEHTINNKKV 359
+ + ++V+ T NN +
Sbjct: 112 SHAAAERVL----QTFNNAPI 128
Score = 33.1 bits (72), Expect = 0.089
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +3
Query: 90 GGGDSQDHNSAEAPGRDDDRK--LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 263
G DS ++A +D +FVGGL TD L++ F YGEI + + G
Sbjct: 240 GQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCG 299
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 37.1 bits (82), Expect = 0.005
Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 11/122 (9%)
Frame = +3
Query: 117 SAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 293
S E P G R LFV ++ D EL F +GEI S+ +SRGF I +
Sbjct: 174 SVEHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYTAC-----KSRGFVMISY 228
Query: 294 KAPESIDKVMAAGEHTINNK----------KVDPKKAKARHGKIFVGGLSSEISDDEIRN 443
+ M A ++T+ K K +P + G + + + + +S+DE+
Sbjct: 229 YDIRAAHAAMRALQNTLLRKRTLDIHFSIPKENPSEKDMNQGTLVIFNVDTTVSNDELLQ 288
Query: 444 FF 449
F
Sbjct: 289 LF 290
Score = 26.6 bits (56), Expect = 7.7
Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 3/102 (2%)
Frame = +3
Query: 153 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 332
L + + ++ EL FGAYGEI I + PN R + + E+ K +
Sbjct: 272 LVIFNVDTTVSNDELLQLFGAYGEIREI--RETPNRRFHRFIEYYDVRDAETALKALNRS 329
Query: 333 EHTINNKKVDPKKAKARHG---KIFVGGLSSEISDDEIRNFF 449
E I K + K +R G ++ V S ++ E+ NF+
Sbjct: 330 E--IGGKCI--KLELSRPGGARRLSVPSQSQDLERTEVTNFY 367
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 37.1 bits (82), Expect = 0.005
Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 11/122 (9%)
Frame = +3
Query: 117 SAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 293
S E P G R LFV ++ D EL F +GEI S+ +SRGF I +
Sbjct: 187 SVEHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYTAC-----KSRGFVMISY 241
Query: 294 KAPESIDKVMAAGEHTINNK----------KVDPKKAKARHGKIFVGGLSSEISDDEIRN 443
+ M A ++T+ K K +P + G + + + + +S+DE+
Sbjct: 242 YDIRAAHAAMRALQNTLLRKRTLDIHFSIPKENPSEKDMNQGTLVIFNVDTTVSNDELLQ 301
Query: 444 FF 449
F
Sbjct: 302 LF 303
Score = 26.6 bits (56), Expect = 7.7
Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 3/102 (2%)
Frame = +3
Query: 153 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 332
L + + ++ EL FGAYGEI I + PN R + + E+ K +
Sbjct: 285 LVIFNVDTTVSNDELLQLFGAYGEIREI--RETPNRRFHRFIEYYDVRDAETALKALNRS 342
Query: 333 EHTINNKKVDPKKAKARHG---KIFVGGLSSEISDDEIRNFF 449
E I K + K +R G ++ V S ++ E+ NF+
Sbjct: 343 E--IGGKCI--KLELSRPGGARRLSVPSQSQDLERTEVTNFY 380
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 37.1 bits (82), Expect = 0.005
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +3
Query: 144 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 314
+R ++VG L + E+ D F YG I I++K P R G+AF+ F+ P D
Sbjct: 6 NRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPP---RPPGYAFVEFEDPRDAD 59
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +3
Query: 102 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEI 227
S ++++ AP R D ++ V GL + ++L+DH G++
Sbjct: 94 SSSYSASRAPSRRSDYRVLVTGLPPSASWQDLKDHMRKAGDV 135
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 36.3 bits (80), Expect = 0.010
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +3
Query: 123 EAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 302
E P + LFV LS +T ++ D F GE+ SI + + + G+ G+ F+ F +
Sbjct: 236 ERPPNSVEEVLFVANLSPQTKISDIFDFFNCVGEVVSIRLMVN-HEGKHVGYGFVEFASA 294
Query: 303 ESIDKVM 323
+ K +
Sbjct: 295 DETKKAL 301
Score = 28.3 bits (60), Expect = 2.5
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +3
Query: 144 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 323
++ LFV L +ET + D F GE+ + + + G+ G F+ F + ++ +
Sbjct: 126 EKTLFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLK-GKLVGCGFVEFASVNEAEEAL 184
Query: 324 AA--GEHTINNK 353
GE NNK
Sbjct: 185 QKKNGECLDNNK 196
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 36.3 bits (80), Expect = 0.010
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +3
Query: 147 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 293
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP---RPPGYAFVEF 52
Score = 30.3 bits (65), Expect = 0.63
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +3
Query: 57 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEI 227
T NG GGG + + P R + ++ V GL + ++L+DH G++
Sbjct: 90 TRGSFNGGGR-GGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDV 145
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 36.3 bits (80), Expect = 0.010
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +3
Query: 147 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 293
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP---RPPGYAFVEF 52
Score = 30.3 bits (65), Expect = 0.63
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +3
Query: 57 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEI 227
T NG GGG + + P R + ++ V GL + ++L+DH G++
Sbjct: 90 TRGSFNGGGR-GGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDV 145
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 36.3 bits (80), Expect = 0.010
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +3
Query: 147 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 293
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP---RPPGYAFVEF 52
Score = 30.3 bits (65), Expect = 0.63
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +3
Query: 57 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEI 227
T NG GGG + + P R + ++ V GL + ++L+DH G++
Sbjct: 90 TRGSFNGGGR-GGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDV 145
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 35.9 bits (79), Expect = 0.013
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +3
Query: 123 EAPGRDDDRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKA 299
E P LFV L++E K L++ F A G + S V N RS G+ F+ FK
Sbjct: 181 ETPSPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKT 240
Query: 300 PESIDKVM 323
+ + +
Sbjct: 241 KKQAEAAL 248
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 35.9 bits (79), Expect = 0.013
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = +3
Query: 120 AEAPGRDDDR-KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 296
AE +++R KLFVG + T+ +L F + + +N+ + T RG F+
Sbjct: 2 AEETMENEERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCP 61
Query: 297 APESIDKVMAAGEHTINNKKVDP 365
E DKV+ ++ +NKK P
Sbjct: 62 TREDADKVI----NSFHNKKTLP 80
Score = 34.7 bits (76), Expect = 0.029
Identities = 22/77 (28%), Positives = 38/77 (49%)
Frame = +3
Query: 153 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 332
LF+ + E D+EL F +G++ S V D TG S+ F FI + + + +
Sbjct: 341 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAI--- 397
Query: 333 EHTINNKKVDPKKAKAR 383
+T+N ++ KK K +
Sbjct: 398 -NTMNGCQLSGKKLKVQ 413
Score = 32.3 bits (70), Expect = 0.16
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +3
Query: 144 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 323
+ KLFVG L ++ E++ F YG I+ + + + S+G F+ +++ E M
Sbjct: 108 EHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRG-SLQTSKGCLFLKYESKEQAVAAM 166
Query: 324 AA--GEHTINNKKV 359
A G H + V
Sbjct: 167 EALNGRHIMEGANV 180
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 35.1 bits (77), Expect = 0.022
Identities = 22/65 (33%), Positives = 33/65 (50%)
Frame = +3
Query: 165 GLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI 344
GLS TTD+ LR F + + +K D T R +GF FI F++ + K + A I
Sbjct: 77 GLSAYTTDQSLRQLFAPFARL----IK-DQQTQRPKGFGFITFESEDDAQKALKALNGKI 131
Query: 345 NNKKV 359
N ++
Sbjct: 132 VNGRL 136
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 35.1 bits (77), Expect = 0.022
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 302
+++VG L T++EL D F A+G + S+ V P G+AF+ F+ P
Sbjct: 3 RVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRP-----PGYAFLDFEDP 48
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 35.1 bits (77), Expect = 0.022
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 153 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 293
L V + + +ELR+ F +G + + + D +G+ RGFAF+ F
Sbjct: 49 LLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEF 95
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 35.1 bits (77), Expect = 0.022
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +3
Query: 153 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 323
L+VGGL+ E + L F +G+I+ + D + R F F+ F E M
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAM 71
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 34.7 bits (76), Expect = 0.029
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +3
Query: 78 NAENGGGDSQDHNSA--EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKT 248
NA NG S + P ++ D+ L++G L D L + F ++GEI V
Sbjct: 454 NAGNGASAHPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIK 513
Query: 249 DPNTGRSRGFAFIVF 293
D TG S+G+ F+ +
Sbjct: 514 DRVTGLSKGYGFVKY 528
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 34.7 bits (76), Expect = 0.029
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +3
Query: 78 NAENGGGDSQDHNSA--EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKT 248
NA NG S + P ++ D+ L++G L D L + F ++GEI V
Sbjct: 454 NAGNGASAHPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIK 513
Query: 249 DPNTGRSRGFAFIVF 293
D TG S+G+ F+ +
Sbjct: 514 DRVTGLSKGYGFVKY 528
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 34.7 bits (76), Expect = 0.029
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Frame = +3
Query: 57 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETT-DKELRDHFGAYGEIES 233
T ++ G+ +GGG S+ +S+ P + LFV + T ++L HF YG+I +
Sbjct: 31 TKSERGGDKRSGGG-SRRSSSSMRPSKT----LFVINFDADNTRTRDLEKHFEPYGKIVN 85
Query: 234 INVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT 341
+ ++ R FAFI ++A E + + A ++
Sbjct: 86 VRIR--------RNFAFIQYEAQEDATRALDASNNS 113
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 34.7 bits (76), Expect = 0.029
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Frame = +3
Query: 57 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETT-DKELRDHFGAYGEIES 233
T ++ G+ +GGG S+ +S+ P + LFV + T ++L HF YG+I +
Sbjct: 72 TKSERGGDKRSGGG-SRRSSSSMRPSKT----LFVINFDADNTRTRDLEKHFEPYGKIVN 126
Query: 234 INVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT 341
+ ++ R FAFI ++A E + + A ++
Sbjct: 127 VRIR--------RNFAFIQYEAQEDATRALDASNNS 154
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 34.7 bits (76), Expect = 0.029
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = +3
Query: 153 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 332
L V LS + L++ FG +GE+ + + D RG ++ FKA +K
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEK----A 155
Query: 333 EHTINNKKVDPKKAKA 380
+ ++ ++D K KA
Sbjct: 156 QLYMDGAQIDGKVVKA 171
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 34.7 bits (76), Expect = 0.029
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = +3
Query: 153 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 332
L V LS + L++ FG +GE+ + + D RG ++ FKA +K
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEK----A 155
Query: 333 EHTINNKKVDPKKAKA 380
+ ++ ++D K KA
Sbjct: 156 QLYMDGAQIDGKVVKA 171
>At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 399
Score = 34.3 bits (75), Expect = 0.039
Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +3
Query: 186 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVD 362
++++ D+F +G ++ + + + R F F+ F PE++ ++A G H + + +V
Sbjct: 169 EEDVSDYFSTFGPVQDVRIPYQ----QKRMFGFVTFMYPETVKSILAKGNPHFVCHSRVL 224
Query: 363 PKKAKARHGKI 395
K K + GK+
Sbjct: 225 VKPYKEK-GKV 234
>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
GI:1279563 from [Medicago sativa]
Length = 335
Score = 34.3 bits (75), Expect = 0.039
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +3
Query: 156 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE 335
F L + L +F ++GEI + V TG S G+A+I K E +K + G
Sbjct: 241 FDASLPVDDIKSALSKYFSSFGEITRVFVPPSHGTGGSLGYAYIDLK--EGAEKALELGR 298
Query: 336 HTI 344
H +
Sbjct: 299 HDV 301
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 34.3 bits (75), Expect = 0.039
Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 11/135 (8%)
Frame = +3
Query: 78 NAENGGGD-SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDP 254
N NG G + +H E P R LFV ++ D EL F YG+I ++
Sbjct: 148 NIPNGAGTVAGEHPYGEHPSRT----LFVRNINSNVEDSELTALFEQYGDIRTLY----- 198
Query: 255 NTGRSRGFAFIVFKAPESIDKVMAAGEH-TINNKKVD---------PKKAKARHGKIFVG 404
T + RGF I + S M + ++ + +K+D P + G + V
Sbjct: 199 TTCKHRGFVMISYYDIRSARMAMRSLQNKPLRRRKLDIHFSIPKDNPSEKDMNQGTLVVF 258
Query: 405 GLSSEISDDEIRNFF 449
L IS+D++ F
Sbjct: 259 NLDPSISNDDLHGIF 273
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 34.3 bits (75), Expect = 0.039
Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 11/135 (8%)
Frame = +3
Query: 78 NAENGGGD-SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDP 254
N NG G + +H E P R LFV ++ D EL F YG+I ++
Sbjct: 148 NIPNGAGTVAGEHPYGEHPSRT----LFVRNINSNVEDSELTALFEQYGDIRTLY----- 198
Query: 255 NTGRSRGFAFIVFKAPESIDKVMAAGEH-TINNKKVD---------PKKAKARHGKIFVG 404
T + RGF I + S M + ++ + +K+D P + G + V
Sbjct: 199 TTCKHRGFVMISYYDIRSARMAMRSLQNKPLRRRKLDIHFSIPKDNPSEKDMNQGTLVVF 258
Query: 405 GLSSEISDDEIRNFF 449
L IS+D++ F
Sbjct: 259 NLDPSISNDDLHGIF 273
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 33.9 bits (74), Expect = 0.051
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIES-INVKTDPNTGRSRGFAFIVFKAPESIDKVM 323
K+FVG L E + F +G IE+ I +K ++ GF FI++ A +S K +
Sbjct: 166 KIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIYAAEKSAMKAV 224
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 360 DPKKAKARHGKIFVGGLSSEISDDEIRNFF 449
+P++ + GKIFVG L + I E FF
Sbjct: 156 NPQQEFRQEGKIFVGNLPTWIKKPEFEEFF 185
>At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing
protein low similarity to poly(A) binding protein II
from [Xenopus laevis] GI:11527140, [Mus musculus]
GI:2351846, [Bos taurus] GI:1051125; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) domain
Length = 537
Score = 33.9 bits (74), Expect = 0.051
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 219 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 326
G ++++ V TDP T +G AF+ F ES+ K +A
Sbjct: 469 GAVQNVIVVTDPVTRHPKGTAFVTFATKESVGKAVA 504
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 33.1 bits (72), Expect = 0.089
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +3
Query: 171 SWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 305
S T++ LRD F GEI + +K + G+SR FA+I F+ +
Sbjct: 11 SKHVTEERLRDVFSRKGEIADVKLKR-KSDGKSRQFAYIGFRTEQ 54
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 33.1 bits (72), Expect = 0.089
Identities = 21/87 (24%), Positives = 43/87 (49%)
Frame = +3
Query: 99 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 278
+ +H S+ P + L++ L + +++ L F +G++ +V G SRGF
Sbjct: 3 NDDNHGSSSCPRKFTS--LYIANLDAQVSEEMLFLMFSDFGKVIR-SVLAKDFRGESRGF 59
Query: 279 AFIVFKAPESIDKVMAAGEHTINNKKV 359
AFI F++ +S + M + + +K+
Sbjct: 60 AFIEFESADSAGRAMLHMDGRLIGQKI 86
>At2g42240.1 68415.m05228 RNA recognition motif (RRM)-containing
protein similar to RNA-binding protein (Hermes) from
{Gallus gallus} SP|Q9W6I1, {Xenopus laevis} SP|Q9YGP5,
{Mus musculus} SP|Q9WVB0; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 124
Score = 33.1 bits (72), Expect = 0.089
Identities = 24/84 (28%), Positives = 40/84 (47%)
Frame = +3
Query: 135 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 314
RD+ R LFV GL + +E+ + F + E+ ++++ ++ FAF VF +S
Sbjct: 31 RDEVRTLFVAGLPEDVKPREIYNLFREFPGYETSHLRSSDG---AKPFAFAVFSDLQSAV 87
Query: 315 KVMAAGEHTINNKKVDPKKAKARH 386
VM H +N D +K H
Sbjct: 88 AVM----HALNGMVFDLEKHSTLH 107
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 32.7 bits (71), Expect = 0.12
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = +3
Query: 135 RDDDR----KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 302
R DDR +L+VG LS T ++L F YG + +++K D +AF+ F P
Sbjct: 3 RYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD--------YAFVEFSDP 54
Query: 303 ESID 314
D
Sbjct: 55 RDAD 58
>At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing
protein contains Pfam profile:PF00076 RNA recognition
motif
Length = 602
Score = 32.7 bits (71), Expect = 0.12
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +3
Query: 183 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKK- 356
TD+++ ++FG +G ++ + + + R F F+ F E++ ++A G H I + +
Sbjct: 331 TDEDVSNYFGNFGPVQDVRIPYQ----QKRMFGFVTFLHSETVRIILARGNPHFICDSRV 386
Query: 357 -VDPKKAKAR 383
V P K K R
Sbjct: 387 LVKPYKEKGR 396
>At5g16840.1 68418.m01973 RNA recognition motif (RRM)-containing
protein predicted proteins - Arabidopsis thaliana
Length = 259
Score = 32.3 bits (70), Expect = 0.16
Identities = 17/71 (23%), Positives = 39/71 (54%)
Frame = +3
Query: 147 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 326
R + VG LS T+ ++++ F GE+ESI+++++ ++ A++ FK + + +
Sbjct: 6 RSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSNEHS------AYVTFKETQGAETAVL 59
Query: 327 AGEHTINNKKV 359
+I ++ V
Sbjct: 60 LSGASIADQSV 70
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 32.3 bits (70), Expect = 0.16
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 296
+++VG L T++EL D F ++G I S+ V P G+AF+ F+
Sbjct: 3 RVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRP-----PGYAFLDFE 46
>At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 552
Score = 31.9 bits (69), Expect = 0.21
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +3
Query: 186 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVD 362
D+++ +F +G ++ + + + R F F+ F PE++ V+A G H I + +V
Sbjct: 273 DEDVATYFSLFGTVQDVRIPYQ----QKRMFGFVSFAHPETVKVVLARGNPHFICDSRVL 328
Query: 363 PKKAKARHGKI 395
K K + GK+
Sbjct: 329 VKPYKEK-GKV 338
>At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM), PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 540
Score = 31.9 bits (69), Expect = 0.21
Identities = 16/71 (22%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +3
Query: 186 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVD 362
++++ ++F +G ++ + + + R F F+ F PE++ ++A G H + + +V
Sbjct: 272 EEDVSNYFSTFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKSILAKGNPHFVCDSRVL 327
Query: 363 PKKAKARHGKI 395
K K + GK+
Sbjct: 328 VKPYKEK-GKV 337
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 31.9 bits (69), Expect = 0.21
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = +3
Query: 135 RDDDR----KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 302
R DDR +L+VG LS T ++L F YG + +++K D +AF+ F P
Sbjct: 3 RYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD--------YAFVEFGDP 54
Query: 303 ESID 314
D
Sbjct: 55 RDAD 58
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 31.9 bits (69), Expect = 0.21
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF-KAPESIDKVMA 326
+++VG L T++EL D F A+G + ++ V P G+AF+ F +++D + A
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRP-----PGYAFLEFDDERDALDAISA 57
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 31.9 bits (69), Expect = 0.21
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +3
Query: 150 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF-KAPESIDKVMA 326
+++VG L T++EL D F A+G + ++ V P G+AF+ F +++D + A
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRP-----PGYAFLEFDDERDALDAISA 57
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 31.5 bits (68), Expect = 0.27
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +3
Query: 84 ENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETT-DKELRDHFGAYGEIESINVKTDPNT 260
+ GG + + G + LFV + T ++L HF YG+I ++ ++
Sbjct: 75 DRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIR----- 129
Query: 261 GRSRGFAFIVFKAPESIDKVMAA 329
R FAFI ++A E + + A
Sbjct: 130 ---RNFAFIQYEAQEDATRALDA 149
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 31.5 bits (68), Expect = 0.27
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +3
Query: 84 ENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETT-DKELRDHFGAYGEIESINVKTDPNT 260
+ GG + + G + LFV + T ++L HF YG+I ++ ++
Sbjct: 75 DRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIR----- 129
Query: 261 GRSRGFAFIVFKAPESIDKVMAA 329
R FAFI ++A E + + A
Sbjct: 130 ---RNFAFIQYEAQEDATRALDA 149
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 31.5 bits (68), Expect = 0.27
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +3
Query: 153 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 314
+++G + +D+ L D G + +++ D T + +GFAF ++ E D
Sbjct: 9 VYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIAD 62
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 31.5 bits (68), Expect = 0.27
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +3
Query: 147 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 296
R +FVG +ET +L F YG ++ +++K+ G+AF+ F+
Sbjct: 2 RPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKS--------GYAFVYFE 43
Score = 27.9 bits (59), Expect = 3.4
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = +3
Query: 93 GGDSQDHNSAEAPGRDDDRK-LFVGGLS-WETTDKELRDHFGAYGEIESINVKTDPNTGR 266
G + A+AP K LFV T + ++ HF YG++ ++ ++
Sbjct: 74 GERGRPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKVTNVRIR------- 126
Query: 267 SRGFAFIVFKAPESIDKVMAAGEHT 341
R F+F+ F+ E K + A + +
Sbjct: 127 -RNFSFVQFETQEDATKALEATQRS 150
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 31.1 bits (67), Expect = 0.36
Identities = 23/80 (28%), Positives = 38/80 (47%)
Frame = +3
Query: 153 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 332
L V L+ ++++L + FG YGEI+ I + PN R F+ F S D + A
Sbjct: 224 LVVFNLAPSVSNRDLENIFGVYGEIKEI--RETPN---KRHHKFVEFFDVRSADAALKA- 277
Query: 333 EHTINNKKVDPKKAKARHGK 392
+N ++ K+ K H +
Sbjct: 278 ---LNRTEIAGKRIKLEHSR 294
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 30.7 bits (66), Expect = 0.48
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +3
Query: 147 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 296
R ++VG L + + E+ D F YG I I +K P R + F+ F+
Sbjct: 7 RSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPP---RPPCYCFVEFE 53
>At5g04210.1 68418.m00409 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 193
Score = 30.3 bits (65), Expect = 0.63
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +3
Query: 186 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 323
++++RDHF YGEIESI + P+ G AF+ + + +K M
Sbjct: 91 EQDIRDHFCPYGEIESIVI--FPHRGGGT-CAFLTYTTRLAAEKAM 133
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 30.3 bits (65), Expect = 0.63
Identities = 20/53 (37%), Positives = 29/53 (54%)
Frame = +3
Query: 147 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 305
R L+VG L ++EL D F +GE+ES+ + GRS +AF+ F E
Sbjct: 23 RHLWVGNLPHGILERELADRFLRFGELESLAFQ----PGRS--YAFVNFNHDE 69
>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
PF02854: MIF4G domain
Length = 1186
Score = 29.9 bits (64), Expect = 0.83
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +3
Query: 72 NGNAENGG--GDSQDHNSAEAPGRDDDR 149
+GN E G GD D++ + PG DDD+
Sbjct: 962 DGNHERGSESGDGDDYDDGDGPGSDDDK 989
>At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 204
Score = 29.5 bits (63), Expect = 1.1
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +3
Query: 111 HNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 272
+N A G D + LFV L++E+++ +++ F +YG I+ + G R
Sbjct: 127 NNDPNATG-DPYKTLFVSRLNYESSESKIKREFESYGPIKRVGYSEHSLAGSVR 179
>At3g18810.1 68416.m02389 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 700
Score = 29.5 bits (63), Expect = 1.1
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 30 NDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDR 149
NDN + +N N N NGGG ++ S P R+ DR
Sbjct: 119 NDNNGNNNNGNNNDNNNQNNGGG--SNNRSPPPPSRNSDR 156
Score = 27.9 bits (59), Expect = 3.4
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 27 NNDNFAQDITTDNQLNGNAENGGGDSQDHNS 119
NN N D +N N N +N G+++D+N+
Sbjct: 76 NNGNNNNDNNNNNNGNNNNDNNNGNNKDNNN 106
>At1g73490.1 68414.m08508 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 259
Score = 29.5 bits (63), Expect = 1.1
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Frame = +3
Query: 144 DRKLFVGGLSWETTDKELR----DHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 311
D LFV G E++ +HF + G++ I V +TG S G+AFI K
Sbjct: 116 DSALFVQGFDTSHPRHEIKTALWNHFSSCGKVYLIYVPIACSTGASVGYAFIDMK--NET 173
Query: 312 DKVMAAGEHTINNKKVD 362
+ G H + +K+D
Sbjct: 174 KGLTLNGSH-LGGRKID 189
>At2g47390.1 68415.m05915 expressed protein
Length = 961
Score = 29.1 bits (62), Expect = 1.5
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +3
Query: 72 NGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRD 203
+G AE+GGG S SA A +DD G + E+RD
Sbjct: 78 SGGAEDGGGTSNGSLSASATATEDDELAI--GTGYRLPPPEIRD 119
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 28.7 bits (61), Expect = 1.9
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 120 AEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVK 245
A+ D+ ++++ L + T EL+D FG G++ I K
Sbjct: 271 ADCDDNCDNARIYISNLPPDVTTDELKDLFGGIGQVGRIKQK 312
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 28.7 bits (61), Expect = 1.9
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 120 AEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVK 245
A+ D+ ++++ L + T EL+D FG G++ I K
Sbjct: 271 ADCDDNCDNARIYISNLPPDVTTDELKDLFGGIGQVGRIKQK 312
>At5g03480.1 68418.m00304 expressed protein ; expression supported
by MPSS
Length = 321
Score = 28.3 bits (60), Expect = 2.5
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 195 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 323
L HF + GEI + V TD G + AF+ + + DK +
Sbjct: 133 LEKHFDSCGEIRHVYVPTDYERGVLKSVAFLRIEGEGAEDKAL 175
>At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing
protein contains Pfam domain PF00076: RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 461
Score = 28.3 bits (60), Expect = 2.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 195 LRDHFGAYGEIESINVKTDPNTGRSRGF 278
L HF GEI + V +P+TG +GF
Sbjct: 364 LSKHFSVCGEITRVFVPRNPSTGAIKGF 391
>At5g22830.1 68418.m02669 magnesium transporter CorA-like family
protein weak similarity to SP|Q01926 RNA splicing
protein MRS2, mitochondrial precursor {Saccharomyces
cerevisiae}; contains Pfam profile PF01544: CorA-like
Mg2+ transporter protein; supporting cDNA
gi|12007446|gb|AF322255.1|AF322255
Length = 459
Score = 27.9 bits (59), Expect = 3.4
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 24 ANNDNFAQDITTDNQ-LNGNAENGGGDSQDHNSAEAPGRDDDRKL 155
A + A+D D + LN + ++ G DS + GRDD +K+
Sbjct: 65 AKSPTTAEDFVGDYESLNVSDDDDGSDSNSSDGDNGGGRDDSKKI 109
>At4g24420.1 68417.m03501 RNA recognition motif (RRM)-containing
protein RRM, RNA recognition motif
Length = 87
Score = 27.9 bits (59), Expect = 3.4
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = +3
Query: 195 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 359
L +HF + G I ++ + P T G A I ++ +KVM + +K+
Sbjct: 5 LTNHFKSCGVIAMVSFRRHPETDVVNGLATITMMGNDADEKVMLLNGSELGGRKL 59
>At4g17720.1 68417.m02646 RNA recognition motif (RRM)-containing
protein
Length = 313
Score = 27.5 bits (58), Expect = 4.4
Identities = 17/67 (25%), Positives = 34/67 (50%)
Frame = +3
Query: 159 VGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEH 338
V +S TD++L++ F G+I + ++T T R++ A++ FK + + +
Sbjct: 8 VSNVSLGATDRDLKEFFSFSGDI--LYLETQSETERTK-LAYVTFKDLQGAETAVLLSGA 64
Query: 339 TINNKKV 359
TI + V
Sbjct: 65 TIVDSSV 71
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 27.5 bits (58), Expect = 4.4
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +3
Query: 180 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 359
T ++++ HF YG++ ++ ++ R FAF+ F E K + + T N+K +
Sbjct: 81 TRERDMERHFEPYGKVLNVRMR--------RNFAFVQFATQEDATKAL---DSTHNSKLL 129
Query: 360 D 362
D
Sbjct: 130 D 130
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 27.5 bits (58), Expect = 4.4
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +3
Query: 180 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 359
T ++++ HF YG++ ++ ++ R FAF+ F E K + + T N+K +
Sbjct: 107 TRERDMERHFEPYGKVLNVRMR--------RNFAFVQFATQEDATKAL---DSTHNSKLL 155
Query: 360 D 362
D
Sbjct: 156 D 156
>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
family protein low similarity to extensin [Volvox
carteri] GI:21992
Length = 312
Score = 27.5 bits (58), Expect = 4.4
Identities = 23/62 (37%), Positives = 28/62 (45%)
Frame = -3
Query: 232 LSISPYAPKXXXXXXXXXXXXSPPTKSFLSSSRPGASALL*SCESPPPFSAFPLSWLSVV 53
LS S +P +PP S LS S P +L S PPP S+ PLS LS
Sbjct: 27 LSPSSSSPSLSPSPPSSSPSSAPP--SSLSPSSPPPLSLSPSSPPPPPPSSSPLSSLSPS 84
Query: 52 IS 47
+S
Sbjct: 85 LS 86
>At5g49760.1 68418.m06163 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 953
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/33 (36%), Positives = 23/33 (69%), Gaps = 4/33 (12%)
Frame = -3
Query: 364 GSTFLLLM----VCSPAAMTLSIDSGALNTMKA 278
G++ LL++ +CS +A+T +D+ ALN +K+
Sbjct: 6 GASLLLILFFFQICSVSALTNGLDASALNALKS 38
>At5g03740.1 68418.m00335 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 287
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +3
Query: 18 VMANNDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDD 146
V A D+ A D+ + ++EN G + ++ +AE+ +DD
Sbjct: 127 VKAKQDDDADGSEEDSSDDDDSENSGDEEEEKVTAESDSEEDD 169
>At1g09810.1 68414.m01101 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 428
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +3
Query: 69 LNGNAENGGGDSQDHN-SAEAPGRDD 143
+NGN+ NG D +DHN E G D
Sbjct: 113 INGNSNNGFWDQRDHNKKPERNGESD 138
>At5g18280.1 68418.m02149 apyrase (APY2) identical to apyrase
GI:6006801, GI:7672685 from [Arabidopsis thaliana]
Length = 472
Score = 26.6 bits (56), Expect = 7.7
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -2
Query: 401 DKNLPMSCFSLLWVYFLVVDG 339
++NLP C L++ Y L++DG
Sbjct: 414 EENLPYLCMDLVYQYTLLIDG 434
>At5g09970.1 68418.m01152 cytochrome P450 family protein
Length = 536
Score = 26.6 bits (56), Expect = 7.7
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = -3
Query: 274 PRDLPVFGSVFTL 236
PR +PVFGS+FTL
Sbjct: 73 PRGIPVFGSLFTL 85
>At1g79100.1 68414.m09223 arginine/serine-rich protein-related
similar to arginine/serine-rich protein [Arabidopsis
thaliana] GI:6601502
Length = 70
Score = 26.6 bits (56), Expect = 7.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 192 ELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 299
++R G +GEI + + D SRG A++ FKA
Sbjct: 3 KIRVFRGDFGEIIHVQLAIDRAANLSRGDAYVEFKA 38
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,327,314
Number of Sequences: 28952
Number of extensions: 225296
Number of successful extensions: 1181
Number of sequences better than 10.0: 228
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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