Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0809
         (645 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024089-4|AAK09073.2|  239|Caenorhabditis elegans Hypothetical ...    33   0.13 
AL024499-1|CAB54261.2|  295|Caenorhabditis elegans Hypothetical ...    32   0.30 
AF016421-7|AAO12430.1|  413|Caenorhabditis elegans Hypothetical ...    29   3.7  

>AC024089-4|AAK09073.2|  239|Caenorhabditis elegans Hypothetical
           protein C36E6.2 protein.
          Length = 239

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = +1

Query: 91  NREDTLRQFCDVTGAD---EDRSKFFLESSNWQLDVALSSFYENGGN 222
           +RE+ + +F ++        D + F+L+ +NW L  A+S FY+  G+
Sbjct: 19  DRENLIHKFEEIISPQMIPHDLAAFYLDLANWNLSTAISVFYDQNGD 65


>AL024499-1|CAB54261.2|  295|Caenorhabditis elegans Hypothetical
           protein H38K22.2a protein.
          Length = 295

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +1

Query: 82  MSANREDTLRQFCDVTGADEDRSKFFLESSNWQLDVALSSFYEN 213
           + ++++  LRQF   T   E  S  FL  +NW ++ A++ +++N
Sbjct: 4   LKSDQKTKLRQFVQWTQVTEAVSLNFLAKANWNIEYAMTLYFDN 47


>AF016421-7|AAO12430.1|  413|Caenorhabditis elegans Hypothetical
           protein F44E7.5a protein.
          Length = 413

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -3

Query: 208 HRNLKEQHLIASLRILKRIYCDLRQHR*HHKTDVMYLLYSQTW*FRIYI 62
           H + KE  L  SLR L   +C  ++ +  H  ++  LLYS  W  R+YI
Sbjct: 202 HTSTKEFKLPLSLRQL--FFCPKQEVKCKHAENIATLLYSANW-KRVYI 247


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.314    0.129    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,509,251
Number of Sequences: 27780
Number of extensions: 255705
Number of successful extensions: 741
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)