Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0808
         (365 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   3.0  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    20   6.9  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    20   9.1  

>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -3

Query: 339 RASSFGNTXLQFRPLPHHAEI 277
           R +  G   +  RPLP+H  +
Sbjct: 41  RVNQLGGVFINGRPLPNHIRL 61


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.2 bits (40), Expect = 6.9
 Identities = 9/39 (23%), Positives = 16/39 (41%)
 Frame = -2

Query: 310 PVPPIASPRGDYSSLRDRANSTPNNMTIEKIARFRTTFP 194
           P P I SP    +S     ++ PN+  +  + +     P
Sbjct: 419 PQPQITSPSNTNTSTSSTNSNKPNSSDLNMLIKETMPLP 457


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 257 GQQHAKQYDNRKNR 216
           GQQH  Q D+R  +
Sbjct: 23  GQQHGPQSDSRNQQ 36


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,317
Number of Sequences: 336
Number of extensions: 1377
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7510735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)