Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0808
         (365 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   0.91 
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   0.91 
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    27   1.2  
SPBC16D10.01c ||SPBC418.03c|conserved fungal protein|Schizosacch...    25   3.7  
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar...    24   6.4  

>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 27.1 bits (57), Expect = 0.91
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 310  PVPPIASPRGD-YSSLRDRANSTPNNMTIEK 221
            P PP    + D Y +L D A  +PN MTI+K
Sbjct: 1099 PPPPAEVEKKDLYLALYDFAGRSPNEMTIKK 1129


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 27.1 bits (57), Expect = 0.91
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 218 RSIPYDISSLKASNS*GSYLIVNLQF 141
           RS P D+SS   S + GS+L  NL F
Sbjct: 478 RSSPRDLSSFSTSVNDGSFLFKNLMF 503


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 339 RASSFGNTXLQFRPLPHHAEIILRSETGPTARQT 238
           RA  + +   Q  PLP+H   +   ET PT  QT
Sbjct: 615 RALEYLDHNKQTNPLPYHIVYMFSFETSPTVFQT 648


>SPBC16D10.01c ||SPBC418.03c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 161 NKILSCWMLLNWKCRTESSD 220
           ++IL  W LL W C  E+ +
Sbjct: 237 DQILDIWYLLGWNCYVEAQN 256


>SPBC530.10c |anc1||adenine nucleotide carrier
           Anc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 263 SERRIISAW*GNGRNWXFVFPNEEARSYALEKRF 364
           +E  +IS W GN  N    FP  +A ++A + +F
Sbjct: 83  AEEGVISLWRGNTANVLRYFPT-QALNFAFKDKF 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,312,146
Number of Sequences: 5004
Number of extensions: 22496
Number of successful extensions: 62
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)