Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0808
         (365 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0135 + 908803-909059,913133-913187,913499-914047,914140-91...    29   1.5  
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043...    27   6.0  
05_02_0162 + 7219596-7219645,7220018-7220498                           27   6.0  
01_01_0051 + 389051-389623                                             27   6.0  
02_05_0847 + 32183249-32183486,32184001-32184118,32184231-321843...    26   7.9  

>05_01_0135 +
           908803-909059,913133-913187,913499-914047,914140-914365,
           914446-914906
          Length = 515

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +2

Query: 155 QLNKILSCWMLLNWKCRTESSDFFYCHIVWRAVGPVSER 271
           Q+  +++C  L NW       ++ Y H  W  V P S R
Sbjct: 441 QVKTVIACCTLHNWILDNGDDEYVYDHETWYRVLPRSNR 479


>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
            21204453-21205031,21205176-21205484,21205638-21205718,
            21205971-21206279,21207430-21207816,21207964-21208767,
            21208856-21209218,21209437-21209667,21209934-21210278,
            21210494-21210712,21210759-21210815,21210978-21211322,
            21211538-21211756,21211803-21211859,21212022-21212366,
            21212584-21212814,21213100-21213458
          Length = 4322

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 259  RANSTPNNMTIEKIARFRTTFPV*KHPTAED 167
            RA  TP+   I K A   T  P  ++PTAED
Sbjct: 1175 RAAITPSKQVIAKDALSVTPLPPTRYPTAED 1205


>05_02_0162 + 7219596-7219645,7220018-7220498
          Length = 176

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 115 YVTFYASLRNCKLTIK*DPQLLDAFKLEMSYGI 213
           Y+T + S+    + I  D QLLD F+L +  GI
Sbjct: 79  YMTLWRSMDGDSVEITSDKQLLDWFQLNLEKGI 111


>01_01_0051 + 389051-389623
          Length = 190

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = -1

Query: 326 SETRXSSSAHCLTTRRLFFAPRPGQQHAKQYDNRKNRSIPYDISSLKASNS*GS 165
           SE+  SSS   L  RR    P P  Q+ K+     + S P   S+  +S+S GS
Sbjct: 126 SESSSSSSDDDLARRRQQRNPSPPPQYKKEARRSPSPSPPSSSSTSSSSSSSGS 179


>02_05_0847 +
           32183249-32183486,32184001-32184118,32184231-32184376,
           32184591-32186080
          Length = 663

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
 Frame = +1

Query: 211 IERFFLLSYC---LACCWPGLG-AKNNLRVVRQWAELEXRVSERRSPVICIRET 360
           +   +LLSYC       W   G    +   V+ W  L     + RS V C+R T
Sbjct: 566 LAEIYLLSYCDKIAMSAWSTFGYVAYSFAGVKPWILLRPDWDKERSEVACVRST 619


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,822,442
Number of Sequences: 37544
Number of extensions: 146142
Number of successful extensions: 438
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)