Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0808
         (365 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    24   0.65 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   1.1  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    23   1.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   4.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   4.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   8.0  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.8 bits (49), Expect = 0.65
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 63  CPNRASCRFLQPGGS 19
           C   A C FL PGGS
Sbjct: 62  CEIYAKCEFLNPGGS 76


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = -2

Query: 304 PPIASPRGDYSSLRDRANSTPNNMTIEKIAR-FRTTFPV 191
           PP  +P     S R R   TP   ++ KI R  R  FP+
Sbjct: 395 PPRQTPPSRKESGRRRRRRTPRYNSVSKIDRASRIVFPL 433


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -2

Query: 322 KHEXPVPPIASPRGD 278
           K + P+PP+  P+G+
Sbjct: 39  KEQEPLPPVTPPQGE 53


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 271 SLRDRANSTPNNMTIEKIARF 209
           S + + N  PNN  IEK   +
Sbjct: 301 SFKRKVNFYPNNQDIEKFLNY 321


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 20  DPPGCRNRHEAR 55
           +P  CR RHE R
Sbjct: 518 EPSACRPRHEIR 529


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 9/32 (28%), Positives = 12/32 (37%)
 Frame = -1

Query: 299  HCLTTRRLFFAPRPGQQHAKQYDNRKNRSIPY 204
            HC   RR    PR G      +   ++   PY
Sbjct: 1694 HCAPNRRCPPPPRMGSAEGLSHRGMEDEICPY 1725


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,841
Number of Sequences: 438
Number of extensions: 1846
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8680350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)