Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0808
         (365 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23550.1 68417.m03393 WRKY family transcription factor contai...    28   2.2  
At5g49440.1 68418.m06117 expressed protein                             27   3.8  
At3g61170.1 68416.m06846 pentatricopeptide (PPR) repeat-containi...    27   5.0  
At3g47660.1 68416.m05188 regulator of chromosome condensation (R...    27   5.0  

>At4g23550.1 68417.m03393 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA binding domain
          Length = 304

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -1

Query: 329 RSETRXSSSAHCLTTRRLFFAPRPGQQHAKQYDNRKNRSIPYDISSLKAS 180
           RS  R SSS  CL  +++   P+  ++    Y N  N  +P   +SL  S
Sbjct: 154 RSYYRCSSSKGCLARKQVERNPQNPEKFTITYTNEHNHELPTRRNSLAGS 203


>At5g49440.1 68418.m06117 expressed protein
          Length = 181

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -1

Query: 335 LLRSETRXSSSAHCLTTRRL 276
           L R ETR +S A C+TTRR+
Sbjct: 123 LKRRETRRTSFAPCVTTRRI 142


>At3g61170.1 68416.m06846 pentatricopeptide (PPR) repeat-containing
           protein strong similarity to PCMP-H2 [Arabidopsis
           thaliana] GI:5050911; contains Pfam profile PF01535: PPR
           repeat
          Length = 783

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 362 IVSLMHMTGLLRSETRXSSSAHCLTTR 282
           I S+++   L R+E + +SSAHCL  +
Sbjct: 331 IPSILNCFALSRTEMKIASSAHCLIVK 357


>At3g47660.1 68416.m05188 regulator of chromosome condensation
           (RCC1) family protein contains Pfam domain PF00415:
           Regulator of chromosome condensation (RCC1)
          Length = 951

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -1

Query: 344 MTGLLRSETRXSSSAHCLTTRRLFFAPRPGQQHAKQYDNRKN-RSIPYDIS 195
           +T L    +R +SSA  L +R    AP  G+Q +   +++ N RS+  D S
Sbjct: 111 LTTLRALLSRNNSSALVLHSRSRSLAPENGEQSSSSQNSKSNIRSVSSDTS 161


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,906,335
Number of Sequences: 28952
Number of extensions: 115574
Number of successful extensions: 268
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 477939072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)