Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0806
         (498 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16839| Best HMM Match : zf-GRF (HMM E-Value=3.7e-15)                29   1.6  
SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53)               29   2.8  
SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.7  
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_58863| Best HMM Match : Fibrinogen_BP (HMM E-Value=2)               27   8.6  

>SB_16839| Best HMM Match : zf-GRF (HMM E-Value=3.7e-15)
          Length = 333

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = -2

Query: 281 LLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSP 174
           L++P  K+F++ CV PG++ R P+  PS++    +P
Sbjct: 207 LVAPITKYFIYGCVTPGAS-RTPTLVPSINGGNTTP 241


>SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53)
          Length = 287

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +1

Query: 286 APSAGPMLPVAAVTRRTSRTVPHTYPSSV 372
           AP+  P  P AA      R+VP T PSSV
Sbjct: 112 APAPAPAAPSAAAAPAPVRSVPSTSPSSV 140


>SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1468

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = +1

Query: 163 AEVSGDPFCGDIDGVPLGQRGVLPGSTQINRKCFREGESRRAPSAGPMLPVAAVTRRTSR 342
           +E+S + + G   G+  G+ G++     +   CFR+    + P+  P  P     R+T R
Sbjct: 484 SEISRNSYGGCESGLTCGKDGMVIAWDGVG--CFRDLRPSKTPTTEPQRPETTTKRKTQR 541



 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = +1

Query: 163  AEVSGDPFCGDIDGVPLGQRGVLPGSTQINRKCFREGESRRAPSAGPMLPVAAVTRRTSR 342
            +E+S + + G   G+  G+ G++     +   CFR+    + P+  P  P     R+T R
Sbjct: 849  SEISRNSYGGCESGLTCGKDGMVIAWDGLG--CFRDLRPSKTPTTEPQRPKTTTKRKTQR 906


>SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1741

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = -2

Query: 329 LVTAATGSMGPADGALLLSPSRKHFLFICVEPGSTPRCPSG 207
           LV A T ++ PAD +L+ SPSR      CV    T  C +G
Sbjct: 751 LVFAWTYNVNPADASLIASPSRS-----CVHGNVTLTCTAG 786


>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2834

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 310  PVAAVTRRTSRTVPHTYPSSVTLNSEPRCC*AQPTIQL 423
            PVAA+  +T+++VPHT  +  T    P  C  Q T  L
Sbjct: 2027 PVAALATQTTQSVPHTMGNPTT--PRPPSCLTQQTSTL 2062


>SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = -2

Query: 332 RLVTAATGSMGPADGALLLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPDTSARQN 153
           RL+  +TG+ G A    + S + KH       P S P  P   PS    +G P    ++ 
Sbjct: 262 RLINRSTGNSGTASPTFITSSANKHAQL----PPSAPASPK--PSTPSSEGMPPAGRKEP 315

Query: 152 KV 147
            +
Sbjct: 316 SI 317


>SB_58863| Best HMM Match : Fibrinogen_BP (HMM E-Value=2)
          Length = 1037

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 229 LPGSTQINRKCFREGESRRAPSAGPMLPVAAVTR 330
           LPGS   +R   R+    R+PSA P+    A+TR
Sbjct: 649 LPGSMPSDRDLGRKNPQGRSPSAPPIPRAKALTR 682


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,471,845
Number of Sequences: 59808
Number of extensions: 281133
Number of successful extensions: 763
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)