Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0806
         (498 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical ...    35   0.038
AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical ...    35   0.038
U41270-3|ABC71846.1|  254|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z82258-4|CAL44968.1| 1467|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z82258-3|CAL44967.1| 1538|Caenorhabditis elegans Hypothetical pr...    27   7.6  
AL023835-19|CAL44978.1| 1467|Caenorhabditis elegans Hypothetical...    27   7.6  
AL023835-18|CAL44977.1| 1538|Caenorhabditis elegans Hypothetical...    27   7.6  
Z81540-9|CAD89742.1|  740|Caenorhabditis elegans Hypothetical pr...    27   10.0 
Z71262-8|CAA95812.1|  302|Caenorhabditis elegans Hypothetical pr...    27   10.0 
Z49125-1|CAA88934.1|  424|Caenorhabditis elegans Hypothetical pr...    27   10.0 
U39644-7|AAO44908.1|  307|Caenorhabditis elegans Collagen protei...    27   10.0 
M55997-1|AAA27995.1|  308|Caenorhabditis elegans cuticlin 1 prot...    27   10.0 

>AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical
           protein Y59A8B.9 protein.
          Length = 187

 Score = 34.7 bits (76), Expect = 0.038
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = -2

Query: 302 GPADGALLLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPDTSA 162
           GPA GA   +PSR     +  +P +T R P+ TP+  P + +P  S+
Sbjct: 14  GPAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPSRSS 60


>AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical
           protein Y59A8B.7 protein.
          Length = 316

 Score = 34.7 bits (76), Expect = 0.038
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = -2

Query: 302 GPADGALLLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPDTSA 162
           GPA GA   +PSR     +  +P +T R P+ TP+  P + +P  S+
Sbjct: 143 GPAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPSRSS 189


>U41270-3|ABC71846.1|  254|Caenorhabditis elegans Hypothetical
           protein AH9.3 protein.
          Length = 254

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 239 EPGSTPRCPSGTPSMSPQKGSPDTSARQNKV 147
           E GS+P+  + T    P+K S D +A +N+V
Sbjct: 44  EAGSSPKATTTTDGEVPEKDSADENAEKNQV 74


>Z82258-4|CAL44968.1| 1467|Caenorhabditis elegans Hypothetical
           protein Y37A1B.17b protein.
          Length = 1467

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 21/72 (29%), Positives = 31/72 (43%)
 Frame = +1

Query: 178 DPFCGDIDGVPLGQRGVLPGSTQINRKCFREGESRRAPSAGPMLPVAAVTRRTSRTVPHT 357
           D F  + + V +G+RG+LP +  +N       ES   PS       A V  RT  T P  
Sbjct: 105 DGFLVNDNAVQIGRRGLLPEAHLVNLHV--SAESPMKPSFTTDFSEADVRFRTPATAPKA 162

Query: 358 YPSSVTLNSEPR 393
             S+  ++   R
Sbjct: 163 ATSNYAVSPYAR 174


>Z82258-3|CAL44967.1| 1538|Caenorhabditis elegans Hypothetical
           protein Y37A1B.17a protein.
          Length = 1538

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 21/72 (29%), Positives = 31/72 (43%)
 Frame = +1

Query: 178 DPFCGDIDGVPLGQRGVLPGSTQINRKCFREGESRRAPSAGPMLPVAAVTRRTSRTVPHT 357
           D F  + + V +G+RG+LP +  +N       ES   PS       A V  RT  T P  
Sbjct: 105 DGFLVNDNAVQIGRRGLLPEAHLVNLHV--SAESPMKPSFTTDFSEADVRFRTPATAPKA 162

Query: 358 YPSSVTLNSEPR 393
             S+  ++   R
Sbjct: 163 ATSNYAVSPYAR 174


>AL023835-19|CAL44978.1| 1467|Caenorhabditis elegans Hypothetical
           protein Y37A1B.17b protein.
          Length = 1467

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 21/72 (29%), Positives = 31/72 (43%)
 Frame = +1

Query: 178 DPFCGDIDGVPLGQRGVLPGSTQINRKCFREGESRRAPSAGPMLPVAAVTRRTSRTVPHT 357
           D F  + + V +G+RG+LP +  +N       ES   PS       A V  RT  T P  
Sbjct: 105 DGFLVNDNAVQIGRRGLLPEAHLVNLHV--SAESPMKPSFTTDFSEADVRFRTPATAPKA 162

Query: 358 YPSSVTLNSEPR 393
             S+  ++   R
Sbjct: 163 ATSNYAVSPYAR 174


>AL023835-18|CAL44977.1| 1538|Caenorhabditis elegans Hypothetical
           protein Y37A1B.17a protein.
          Length = 1538

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 21/72 (29%), Positives = 31/72 (43%)
 Frame = +1

Query: 178 DPFCGDIDGVPLGQRGVLPGSTQINRKCFREGESRRAPSAGPMLPVAAVTRRTSRTVPHT 357
           D F  + + V +G+RG+LP +  +N       ES   PS       A V  RT  T P  
Sbjct: 105 DGFLVNDNAVQIGRRGLLPEAHLVNLHV--SAESPMKPSFTTDFSEADVRFRTPATAPKA 162

Query: 358 YPSSVTLNSEPR 393
             S+  ++   R
Sbjct: 163 ATSNYAVSPYAR 174


>Z81540-9|CAD89742.1|  740|Caenorhabditis elegans Hypothetical
           protein F46B3.17 protein.
          Length = 740

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
 Frame = -2

Query: 356 VCGTVREVRLVTAATGSMGPADGALLL-SPSRKHFLFICVEPGSTPRCPSGTPSMSPQKG 180
           + GT+      T A+ S  P     L+ S  R   L IC  P    RCP G P     +G
Sbjct: 166 ILGTIPTSTTTTTASPSPTPQQHPTLMNSGERLGPLPIC--PLDENRCPMGPPGPPGLRG 223

Query: 179 SPDTS 165
           +P  S
Sbjct: 224 TPGQS 228


>Z71262-8|CAA95812.1|  302|Caenorhabditis elegans Hypothetical
           protein F22D6.10 protein.
          Length = 302

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 239 EPGSTPRCPSGTPSMSPQKGSPDTSARQNK 150
           + GST  CP+G P      G+P  + R  +
Sbjct: 133 QDGSTSTCPAGPPGEQGPDGAPGEAGRDGQ 162


>Z49125-1|CAA88934.1|  424|Caenorhabditis elegans Hypothetical
           protein C47G2.1 protein.
          Length = 424

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 223 GVLPGSTQINRKCFREGESRRAPSAGPMLPVAAVTRRTSRT 345
           G+L    +IN     EG S  AP A  ++   +V RR + T
Sbjct: 346 GILDVRVEINTLDIMEGASPSAPEAAALVSEESVRRRATST 386


>U39644-7|AAO44908.1|  307|Caenorhabditis elegans Collagen protein
           171 protein.
          Length = 307

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
 Frame = -2

Query: 317 ATGSMGPADGALLLSPSRKHFLFICVE--PGST----PRCPSGTPSMSPQKGSP 174
           A G+ GP DG      S   F F C    PG      P+ P+G P    Q G+P
Sbjct: 140 APGTNGP-DGRPATQASASDFCFDCPPGPPGPAGSIGPKGPNGNPGFDGQPGAP 192


>M55997-1|AAA27995.1|  308|Caenorhabditis elegans cuticlin 1
           protein.
          Length = 308

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 223 GVLPGSTQINRKCFREGESRRAPSAGPMLPVAAVTRRTSRT 345
           G+L    +IN     EG S  AP A  ++   +V RR + T
Sbjct: 230 GILDVRVEINTLDIMEGASPSAPEAAALVSEESVRRRATST 270


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,570,563
Number of Sequences: 27780
Number of extensions: 211507
Number of successful extensions: 646
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)