Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0806
         (498 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56470.1 68416.m06280 F-box family protein similar to F-box p...    27   9.3  
At1g11800.1 68414.m01354 endonuclease/exonuclease/phosphatase fa...    27   9.3  
At1g03010.1 68414.m00273 phototropic-responsive NPH3 family prot...    27   9.3  

>At3g56470.1 68416.m06280 F-box family protein similar to F-box
           protein family, AtFBX7 (GI:20197899) [Arabidopsis
           thaliana]
          Length = 367

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -3

Query: 334 CV*SPPLPAAWVQRMALSCSRLHGNTSCL 248
           CV  P L  A+ QRMA SC+    +TSCL
Sbjct: 136 CVPMPTLWMAYDQRMAFSCAPT--STSCL 162


>At1g11800.1 68414.m01354 endonuclease/exonuclease/phosphatase
           family protein contains Pfam profile PF03372:
           Endonuclease/Exonuclease/phosphatase family
          Length = 441

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = -2

Query: 347 TVREVRLVT--AATGSMGPADGALLLSPSRKHFLFICVEPGSTPRCPSGTPSMS 192
           T+R +R+VT  A + S        L S S+K    IC+ P S P      PS+S
Sbjct: 4   TIRFLRIVTSRAMSSSWSCNKCTFLNSASQKLNCMICLAPVSLPSLSPPPPSLS 57


>At1g03010.1 68414.m00273 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 634

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 336 LAHCSTYLPIISYLKFGAPLLLSTANNSVAE 428
           L HC T +P+   L     L+++ ANN+  E
Sbjct: 150 LHHCETLIPVSEDLNLVNRLIIAVANNACKE 180


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,844,846
Number of Sequences: 28952
Number of extensions: 186139
Number of successful extensions: 512
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)