Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0805
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo...    26   2.9  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   3.8  
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    25   6.7  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    25   8.9  

>SPAC3C7.07c |||arginine-tRNA protein transferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 8/33 (24%), Positives = 18/33 (54%)
 Frame = +1

Query: 34  IYKHYSTNVKRLVFGRVALCLRVYIEIVRCYRY 132
           +Y  Y  ++ +   GR++ C  +++ +   YRY
Sbjct: 181 VYLFYDPDMSKFSLGRISACREIWLALECGYRY 213


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
 Frame = +3

Query: 231 TTASFLAG--LPEPLFLFT----YLIKIPLLFYYGLCTYIIYLHMY 350
           T  SF  G  LP+P+F+      Y I  PL+  +GL  +II   +Y
Sbjct: 625 TPDSFSVGIFLPQPMFIMLICLCYSIISPLILVFGLIYFIIGFLVY 670



 Score = 25.0 bits (52), Expect = 6.7
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 207 GVLTINKITTASFLAGLPEPLFLFTYLIKIPLLFYYGLCTYIIYL 341
           G    N I   S + GLP+P   F YL    +LF Y +  +++Y+
Sbjct: 173 GPSLFNPIGNLSDIPGLPQPGDGFLYLY---VLFTYFISIFLLYV 214


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 306 FYYGLCTYIIYLHMYTIQHLKYF 374
           +YY + TY+ YL +  I H++ F
Sbjct: 90  YYYVVATYLTYLVLIIIGHVRDF 112


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 5   GLQEFGTRLLFISIILLM*N 64
           G+  FGT LLFI  +LL+ N
Sbjct: 463 GISVFGTALLFIDDVLLIDN 482


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,098,656
Number of Sequences: 5004
Number of extensions: 42388
Number of successful extensions: 86
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)