Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0804
(498 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy... 87 2e-18
SPBC776.06c |||spindle pole body interacting protein |Schizosacc... 27 2.1
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 26 2.7
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 26 3.6
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 26 3.6
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 25 6.3
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz... 25 6.3
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac... 25 8.4
SPBC146.11c |mug97|meu33|meiotically upregulated gene Mug97|Schi... 25 8.4
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos... 25 8.4
>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 754
Score = 86.6 bits (205), Expect = 2e-18
Identities = 35/78 (44%), Positives = 52/78 (66%)
Frame = +3
Query: 147 WLMPNGNPTGIYVYNCIANQRVPIILNDPHIATWYSCGPTVYESAHIGHASCYVKLDIIQ 326
W +P G T +YVYN + + +VP + N ++ TWY CGPTVY+++H+GHA YV DI++
Sbjct: 11 WGVPKGQRTELYVYNTLTHSKVPFVSNGSNL-TWYCCGPTVYDASHMGHARNYVTTDILR 69
Query: 327 RILKSFFNIKIVSAMGIT 380
RIL+S+F I +T
Sbjct: 70 RILQSYFGYNITFVQNVT 87
>SPBC776.06c |||spindle pole body interacting protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 26.6 bits (56), Expect = 2.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 78 VFNLTFVRSLSHVCSLKPYKDTKWLMPNGNPT 173
VF + + HV +LKP DT W + + +P+
Sbjct: 104 VFAMAICTTFPHVHALKPLLDTAWEIFDSSPS 135
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 26.2 bits (55), Expect = 2.7
Identities = 9/40 (22%), Positives = 20/40 (50%)
Frame = -3
Query: 427 CVLLSRPFLMILSSISVIPIAETIFILKNDLRILCMISSF 308
C +P+ + L ++P++ + I+ D R LC + +
Sbjct: 1255 CESADKPYALPLLDSGMVPVSTQLAIVNPDTRELCRVGEY 1294
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 25.8 bits (54), Expect = 3.6
Identities = 15/65 (23%), Positives = 33/65 (50%)
Frame = -2
Query: 410 AFLNDFVVYIRNTHSGDDFYIEERFENSLYDIEFHIAAGVTYVSRFVYRGATRIPGSDVR 231
A L++ ++I N S DD + + + F ++ ++++ Y GAT +P +D +
Sbjct: 1674 ASLHNRRIHITNVSSKDDLNLIVLAKQRSLPVTFDVSVYSLFLNQNDYPGATFLPTADDQ 1733
Query: 230 II*YN 216
+ +N
Sbjct: 1734 VEIWN 1738
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 25.8 bits (54), Expect = 3.6
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -2
Query: 416 FEAFLNDFVVYIRNTHSGDDFYIEERFENSLYDIEF 309
FE++ D +I + DD ++ + EN+ YD +F
Sbjct: 471 FESWFRDSSDHIFSRVKDDDKFVYQSQENNFYDADF 506
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 25.0 bits (52), Expect = 6.3
Identities = 10/33 (30%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -3
Query: 436 FVKCVLLSRPFLMILSSISV-IPIAETIFILKN 341
F+ +L + ++ ++S+ +PIAE + +LKN
Sbjct: 750 FLSTLLQHKTIILFTHNVSLCLPIAENVIVLKN 782
>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 25.0 bits (52), Expect = 6.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 70 FINDTFQAVRTC*YPRAEFLQPG 2
FI + F+ V +C Y +FL PG
Sbjct: 235 FIPNLFKKVNSCVYVMPDFLSPG 257
>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 265
Score = 24.6 bits (51), Expect = 8.4
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -2
Query: 389 VYIRNTHSGDDFYIEERFENSLYDIEFH 306
V RNTH G D F N + EFH
Sbjct: 229 VVFRNTHKGVDDTPRPGFVNDMLRSEFH 256
>SPBC146.11c |mug97|meu33|meiotically upregulated gene
Mug97|Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 24.6 bits (51), Expect = 8.4
Identities = 8/29 (27%), Positives = 17/29 (58%)
Frame = +3
Query: 3 PGCRNSARGYQQVRTA*NVSLIKMKVFNL 89
PGCR A Y+Q+ + + L+ + ++ +
Sbjct: 252 PGCRTVAERYEQIEASGSEELLIIPIYKI 280
>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 701
Score = 24.6 bits (51), Expect = 8.4
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +1
Query: 391 TKSLRKASKVKHTSQILLNNMSMNSGL 471
T SL K S V TS ILLN +++SGL
Sbjct: 179 TSSLSKVSVV--TSWILLNQANISSGL 203
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,103,032
Number of Sequences: 5004
Number of extensions: 43906
Number of successful extensions: 116
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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