Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0804
(498 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0304 - 2378657-2378704,2378790-2378795,2378860-2379039,237... 52 2e-07
09_06_0243 - 21813223-21813456,21814266-21814367,21814501-218147... 47 1e-05
10_08_0290 + 16549048-16549262,16549770-16549833,16550106-165502... 42 4e-04
05_03_0418 + 13700855-13700942,13701602-13701728,13701845-137019... 28 3.6
03_02_0288 - 7106736-7107555,7108028-7108584,7108720-7108937,710... 28 4.8
02_05_0362 + 28291891-28292263,28292432-28292616 28 4.8
08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034 27 8.4
>03_01_0304 -
2378657-2378704,2378790-2378795,2378860-2379039,
2379145-2379327,2379549-2379632,2379748-2379873,
2379964-2380245,2380326-2380496,2380828-2380989,
2381501-2381564,2382040-2382221
Length = 495
Score = 52.4 bits (120), Expect = 2e-07
Identities = 27/79 (34%), Positives = 40/79 (50%)
Frame = +3
Query: 249 YSCGPTVYESAHIGHASCYVKLDIIQRILKSFFNIKIVSAMGITXXXXXXXXXGLESKTH 428
Y CG T Y+ +HIGHA YV D++ R LK F ++ T E+
Sbjct: 35 YVCGVTPYDFSHIGHARAYVAFDVLYRYLK-FLGYEVEYVRNFTDIDDKIIKRANEAGET 93
Query: 429 FTNIAKQYEHEFWLDMASL 485
T+++ ++ +EF LDMA L
Sbjct: 94 VTSLSSRFINEFLLDMAQL 112
>09_06_0243 -
21813223-21813456,21814266-21814367,21814501-21814701,
21815591-21815716,21815791-21816072,21816218-21816388,
21816838-21816999,21817404-21817467,21818136-21818503
Length = 569
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/80 (30%), Positives = 40/80 (50%)
Frame = +3
Query: 249 YSCGPTVYESAHIGHASCYVKLDIIQRILKSFFNIKIVSAMGITXXXXXXXXXGLESKTH 428
Y CG T Y+ +HIGHA YV D++ R L+ + + K+ T +
Sbjct: 97 YVCGVTPYDDSHIGHARAYVAFDVLYRYLR-YLDHKVRYVRNFTDIDDKIIARANQLGED 155
Query: 429 FTNIAKQYEHEFWLDMASLN 488
+++K+Y +F DMA+L+
Sbjct: 156 PFSLSKRYSDDFLSDMANLH 175
>10_08_0290 +
16549048-16549262,16549770-16549833,16550106-16550267,
16550786-16550956,16551041-16551235,16551421-16551546,
16551648-16551809,16551953-16552120,16552223-16552435
Length = 491
Score = 41.5 bits (93), Expect = 4e-04
Identities = 22/79 (27%), Positives = 36/79 (45%)
Frame = +3
Query: 249 YSCGPTVYESAHIGHASCYVKLDIIQRILKSFFNIKIVSAMGITXXXXXXXXXGLESKTH 428
Y CG T Y+ +H+GHA YV D++ R LK + ++ T E+
Sbjct: 46 YVCGVTPYDYSHVGHARAYVAFDVLFRYLK-YLGYEVNYVRNFTDIDDKIIKRANEAGED 104
Query: 429 FTNIAKQYEHEFWLDMASL 485
+++ ++ EF DM L
Sbjct: 105 ALSLSSRFIDEFHRDMYEL 123
>05_03_0418 +
13700855-13700942,13701602-13701728,13701845-13701916,
13702079-13702153,13702290-13702361,13702477-13702638,
13702726-13702800,13702880-13702951,13703040-13703108,
13703196-13703264,13703355-13703429,13703522-13703593,
13703668-13703737,13703920-13704361,13704442-13704573,
13704664-13704803,13704910-13705129,13705301-13705536,
13705732-13706256
Length = 930
Score = 28.3 bits (60), Expect = 3.6
Identities = 18/67 (26%), Positives = 30/67 (44%)
Frame = +3
Query: 174 GIYVYNCIANQRVPIILNDPHIATWYSCGPTVYESAHIGHASCYVKLDIIQRILKSFFNI 353
G+Y + + +NDP A+W S G + E+ I A C+ L+ ++ F I
Sbjct: 537 GVYAVRQKKRAQKLVSINDP-FASWGSMGQDIGEAPKIKSARCFT-LEDLKLSTNDFREI 594
Query: 354 KIVSAMG 374
+ A G
Sbjct: 595 NAIGAGG 601
>03_02_0288 -
7106736-7107555,7108028-7108584,7108720-7108937,
7109223-7109322,7110776-7110856
Length = 591
Score = 27.9 bits (59), Expect = 4.8
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Frame = -2
Query: 467 PEFMLILFSNICEVCFTFEAFLNDFVVYIRN---THSGDDFYIEERFENSLYDIEFHIAA 297
P+ M L S V + ++L+ ++ + + T GD +I + D F + A
Sbjct: 510 PDAMRSLCSAFALVTVSLGSYLSSIILTLVSYFTTQGGDPGWIPDNLNEGHLDRFFSLIA 569
Query: 296 GVTYVSRFVYRG 261
G+ +V+ V+ G
Sbjct: 570 GINFVNLLVFTG 581
>02_05_0362 + 28291891-28292263,28292432-28292616
Length = 185
Score = 27.9 bits (59), Expect = 4.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 263 HGIRICSHRSRQLLCETRYHT 325
H +RI SHR+ + C TR H+
Sbjct: 61 HSVRILSHRTVRPFCSTRLHS 81
>08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034
Length = 930
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 63 LIKMKVFNLTFVRSLSHVCSLKPYKDT 143
LIKM+V N+TF + + V ++ Y D+
Sbjct: 687 LIKMRVLNITFSKPVDMVDEVRKYTDS 713
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,656,563
Number of Sequences: 37544
Number of extensions: 242830
Number of successful extensions: 461
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -