Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0804
(498 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19343| Best HMM Match : tRNA-synt_1e (HMM E-Value=0) 77 1e-14
SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.31
SB_33778| Best HMM Match : SET (HMM E-Value=0.62) 31 0.40
SB_18731| Best HMM Match : DUF1309 (HMM E-Value=2) 31 0.40
SB_43290| Best HMM Match : AMP-binding (HMM E-Value=6.5e-16) 31 0.53
SB_32804| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.92
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0) 29 2.1
SB_40909| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_58774| Best HMM Match : PAN (HMM E-Value=1.2) 27 8.6
>SB_19343| Best HMM Match : tRNA-synt_1e (HMM E-Value=0)
Length = 583
Score = 76.6 bits (180), Expect = 1e-14
Identities = 30/78 (38%), Positives = 50/78 (64%)
Frame = +3
Query: 147 WLMPNGNPTGIYVYNCIANQRVPIILNDPHIATWYSCGPTVYESAHIGHASCYVKLDIIQ 326
W P G+ + +YN + ++ I ++ TWYSCGPTVY+++H+GHA Y+ DI++
Sbjct: 9 WNQPQGHGE-LKLYNSLTREKNLFIPSNGRRVTWYSCGPTVYDASHMGHARSYITFDIVR 67
Query: 327 RILKSFFNIKIVSAMGIT 380
R+L+S+FN + M +T
Sbjct: 68 RVLQSYFNYDVFCVMNVT 85
>SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1021
Score = 29.5 bits (63), Expect(2) = 0.31
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -2
Query: 473 IKPEFMLILFSNICEVCFTFEAFLNDFVVYIRNTHSGDDFYIEERFENSLY 321
+ PE ++L + E T E + DFV N GD I + +N++Y
Sbjct: 117 VSPENRVLLLKQLIEFVSTKENEVKDFVTNFLNKEKGDKSAIGQDEQNNVY 167
Score = 21.0 bits (42), Expect(2) = 0.31
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -2
Query: 200 RNTIINVNTCRVSIRHKPFCIFIR 129
RNT +N + S R CI +R
Sbjct: 181 RNTSVNRSNISASARKSRSCILLR 204
>SB_33778| Best HMM Match : SET (HMM E-Value=0.62)
Length = 646
Score = 31.5 bits (68), Expect = 0.40
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = -3
Query: 361 TIFILKNDLRILCMISSFT*QLA*PM*ADSYTVGPQEYQVAM*GSFNIIGTRW 203
T+ +L+ D R + SFT + A P+ DS+T+ P+ ++ + SF R+
Sbjct: 92 TLTVLQQDARYRGHLDSFTVRRALPLPLDSFTINPEASRLPLKNSFTFDDFRY 144
>SB_18731| Best HMM Match : DUF1309 (HMM E-Value=2)
Length = 356
Score = 31.5 bits (68), Expect = 0.40
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +3
Query: 168 PTGIYVYNCIANQRVPIILNDP--HIATWYSCGPTVYES-AHIGHASCYV 308
P IY I + P ++N P H Y P VY+S +HIGHAS ++
Sbjct: 197 PAIIYHQPPIVFHQPPPVVNQPILHSHDTYVTRPRVYQSTSHIGHASTFI 246
>SB_43290| Best HMM Match : AMP-binding (HMM E-Value=6.5e-16)
Length = 980
Score = 31.1 bits (67), Expect = 0.53
Identities = 21/71 (29%), Positives = 30/71 (42%)
Frame = +3
Query: 150 LMPNGNPTGIYVYNCIANQRVPIILNDPHIATWYSCGPTVYESAHIGHASCYVKLDIIQR 329
L P G + V+ C+ +P+ + PH S PTV + A L I +
Sbjct: 383 LYPPGVDFIVAVFGCLFAGLIPVPVRPPHANNISSTLPTVKMVTDVSKARAVFTLHSIAK 442
Query: 330 ILKSFFNIKIV 362
ILKS I +V
Sbjct: 443 ILKSKEAIAVV 453
>SB_32804| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 169
Score = 30.3 bits (65), Expect = 0.92
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 150 LMPNGNPTGIYVYNCIANQRVPIILNDPHIATWYSCGPTVYESAHI 287
++ N NP +++ N N ++ I + DP I GPTV E+AH+
Sbjct: 124 ILSNNNP--LFIVNSKTNVKLSIPVMDPRIKR---SGPTVVEAAHV 164
>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 4833
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 153 MPNGNPTGIYVYNCIANQRVPIILN-DPHIATWYSCGPTVYESAHIGHASCYV 308
+PNGNP G++ ++ + ++ N D + YS V +S H+ A+ V
Sbjct: 2644 LPNGNPGGVFAIGALSG-NITLVKNLDRETKSLYSLEVFVNDSLHVTQATVKV 2695
>SB_40909| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 164
Score = 28.3 bits (60), Expect = 3.7
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 234 HIATWYSCGPTVYESAHIGHASCYVKLDIIQRI 332
H+ T+ C P H+G SCYV + ++R+
Sbjct: 90 HVHTFGVCCPKAAPIIHLGATSCYVGDNTVERL 122
>SB_58774| Best HMM Match : PAN (HMM E-Value=1.2)
Length = 175
Score = 27.1 bits (57), Expect = 8.6
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = -2
Query: 476 HIKPEFMLILFSNICEVCFTFEAFLNDFVVYIRN-THSGDDFYIEERFENSLY-DIEFHI 303
++ PE L + + +C CF +A + V RN T++G Y R+ Y D+ +
Sbjct: 8 NLLPEIYLFILALLCSECFVCKAGKQETVAIHRNFTYNGIS-YARFRYNEMKYLDLSGKV 66
Query: 302 AAGVTYVS 279
V VS
Sbjct: 67 VRSVRNVS 74
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,280,100
Number of Sequences: 59808
Number of extensions: 306603
Number of successful extensions: 719
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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