Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0804
         (498 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077541-9|AAC64633.1|  909|Caenorhabditis elegans Cysteinyl trn...    71   5e-13
AF077541-8|AAK68426.1|  908|Caenorhabditis elegans Cysteinyl trn...    71   5e-13
AF077541-10|AAM54170.2|  179|Caenorhabditis elegans Cysteinyl tr...    57   6e-09
Z92790-1|CAB07225.1|  239|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z29443-11|CAK55173.1|  367|Caenorhabditis elegans Hypothetical p...    28   4.3  
Z71186-1|CAA94913.1|  301|Caenorhabditis elegans Hypothetical pr...    27   7.6  
U00036-15|AAK29857.1|  731|Caenorhabditis elegans Hypothetical p...    27   7.6  
AF143148-1|AAD37914.1|  315|Caenorhabditis elegans R151.8B prote...    27   7.6  
AF067618-6|AAC19197.2| 1015|Caenorhabditis elegans Hypothetical ...    27   7.6  
AF022968-6|AAB69884.1|  388|Caenorhabditis elegans Dehydrogenase...    27   10.0 

>AF077541-9|AAC64633.1|  909|Caenorhabditis elegans Cysteinyl trna
           synthetase protein1, isoform a protein.
          Length = 909

 Score = 70.9 bits (166), Expect = 5e-13
 Identities = 28/71 (39%), Positives = 43/71 (60%)
 Frame = +3

Query: 168 PTGIYVYNCIANQRVPIILNDPHIATWYSCGPTVYESAHIGHASCYVKLDIIQRILKSFF 347
           P  + VYN +  Q+   + N+     WY CGPTVY+S+H+GHA  Y+ LDI++R+ + +F
Sbjct: 181 PPQLTVYNSLTRQKEVFVPNEGKRVRWYICGPTVYDSSHMGHARSYLSLDILRRVFRDYF 240

Query: 348 NIKIVSAMGIT 380
              +   M IT
Sbjct: 241 GYDVEFIMNIT 251



 Score = 29.5 bits (63), Expect = 1.4
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +3

Query: 429 FTNIAKQYEHEFWLDMASLNV 491
           F ++AK YE EF  DMA LNV
Sbjct: 368 FDDLAKTYEKEFLADMARLNV 388


>AF077541-8|AAK68426.1|  908|Caenorhabditis elegans Cysteinyl trna
           synthetase protein1, isoform b protein.
          Length = 908

 Score = 70.9 bits (166), Expect = 5e-13
 Identities = 28/71 (39%), Positives = 43/71 (60%)
 Frame = +3

Query: 168 PTGIYVYNCIANQRVPIILNDPHIATWYSCGPTVYESAHIGHASCYVKLDIIQRILKSFF 347
           P  + VYN +  Q+   + N+     WY CGPTVY+S+H+GHA  Y+ LDI++R+ + +F
Sbjct: 180 PPQLTVYNSLTRQKEVFVPNEGKRVRWYICGPTVYDSSHMGHARSYLSLDILRRVFRDYF 239

Query: 348 NIKIVSAMGIT 380
              +   M IT
Sbjct: 240 GYDVEFIMNIT 250



 Score = 29.5 bits (63), Expect = 1.4
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +3

Query: 429 FTNIAKQYEHEFWLDMASLNV 491
           F ++AK YE EF  DMA LNV
Sbjct: 367 FDDLAKTYEKEFLADMARLNV 387


>AF077541-10|AAM54170.2|  179|Caenorhabditis elegans Cysteinyl trna
           synthetase protein2, isoform a protein.
          Length = 179

 Score = 57.2 bits (132), Expect = 6e-09
 Identities = 21/48 (43%), Positives = 32/48 (66%)
 Frame = +3

Query: 237 IATWYSCGPTVYESAHIGHASCYVKLDIIQRILKSFFNIKIVSAMGIT 380
           +  WY CGPTV +S+H+GHA  Y+ LDI++R+ + +F   +   M IT
Sbjct: 52  VVGWYICGPTVNDSSHMGHARSYLSLDILRRVFRDYFGYDVEFIMNIT 99


>Z92790-1|CAB07225.1|  239|Caenorhabditis elegans Hypothetical
           protein H03G16.1 protein.
          Length = 239

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = -2

Query: 446 FSNICEVCFTFEAFLNDFVVYIRNTHSGDDFYIEERFENSLYDIEF 309
           FS++ ++  TF+ F N+FV  I++      FY+    +N  ++ +F
Sbjct: 150 FSHVTDLNMTFDFFTNEFVPRIQDM----SFYLPGNLKNGRFEYDF 191


>Z29443-11|CAK55173.1|  367|Caenorhabditis elegans Hypothetical
           protein T07C4.11 protein.
          Length = 367

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 147 WLMPNGNPTGIYVYNCIANQRVPII 221
           W++PNG P   Y+     + +VPI+
Sbjct: 45  WVLPNGQPNKEYLKKSYGDSKVPIL 69


>Z71186-1|CAA94913.1|  301|Caenorhabditis elegans Hypothetical
           protein F23D12.1 protein.
          Length = 301

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
 Frame = -2

Query: 479 CHIKPEFMLILFSNICEVCFTFEAFLNDFVVYIRNTHSGDDFYIEERFENSLYD-IEFHI 303
           CH K   + I    I  +CF   A L D    + +  S D          SL+D  EF  
Sbjct: 31  CHAKTFTIFIGIFEIFTICFLLVAVLPDVTTRVCDKLSND------TESESLFDHFEFEN 84

Query: 302 AAGVTYVSRFV 270
              V YVS F+
Sbjct: 85  IKNVAYVSSFL 95


>U00036-15|AAK29857.1|  731|Caenorhabditis elegans Hypothetical
           protein R151.8 protein.
          Length = 731

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 9/46 (19%), Positives = 25/46 (54%)
 Frame = -2

Query: 401 NDFVVYIRNTHSGDDFYIEERFENSLYDIEFHIAAGVTYVSRFVYR 264
           ND  +++  T +GD  ++ +R +N    ++ +    +T +  F+++
Sbjct: 226 NDLYIHLEPTSNGDHVFMRQRNQNPFLRVKLNANDRITKLLEFLHK 271


>AF143148-1|AAD37914.1|  315|Caenorhabditis elegans R151.8B protein
           protein.
          Length = 315

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 9/46 (19%), Positives = 25/46 (54%)
 Frame = -2

Query: 401 NDFVVYIRNTHSGDDFYIEERFENSLYDIEFHIAAGVTYVSRFVYR 264
           ND  +++  T +GD  ++ +R +N    ++ +    +T +  F+++
Sbjct: 226 NDLYIHLEPTSNGDHVFMRQRNQNPFLRVKLNANDRITKLLEFLHK 271


>AF067618-6|AAC19197.2| 1015|Caenorhabditis elegans Hypothetical
           protein F56H1.5 protein.
          Length = 1015

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 330 FSV*YRVSHSSWRDLCEQIR 271
           FS+ Y+ +  SWR +CE+ R
Sbjct: 485 FSMIYQTNQESWRSICEKTR 504


>AF022968-6|AAB69884.1|  388|Caenorhabditis elegans Dehydrogenases,
           short chain protein16 protein.
          Length = 388

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 406 FLMILSSISVIPIAETIFILKN 341
           ++  LS I++IP+  TIF +KN
Sbjct: 348 WIQFLSQIAIIPLLYTIFFVKN 369


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,545,388
Number of Sequences: 27780
Number of extensions: 239569
Number of successful extensions: 587
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)