Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0804
         (498 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   0.44 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.4  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +3

Query: 81  FNLTFVRS--LSHVCSLKPYKDTKWLMPNGNPTGIYVYNCIANQRVPIIL 224
           +N+TF ++   +      P K   W+    N  G  VY+ + +  +P+++
Sbjct: 213 YNMTFAQNGPFNTTTIFVPVKPCPWICELTNDAGYVVYSALGSFYIPMLV 262


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 6/23 (26%), Positives = 13/23 (56%)
 Frame = -1

Query: 318 YRVSHSSWRDLCEQIRIPWGHKN 250
           Y++S  SW    +++ +P   +N
Sbjct: 913 YKISKGSWETDIDRVLVPGSQQN 935


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,343
Number of Sequences: 438
Number of extensions: 2959
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)