Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0804
         (498 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g38830.1 68418.m04697 tRNA synthetase class I (C) family prot...    43   1e-04
At2g31170.1 68415.m03805 tRNA synthetase class I (C) family prot...    42   3e-04
At3g56300.1 68416.m06258 tRNA synthetase class I (C) family prot...    38   0.005
At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6 ...    27   9.3  
At1g55120.1 68414.m06295 beta-fructosidase, putative / beta-fruc...    27   9.3  

>At5g38830.1 68418.m04697 tRNA synthetase class I (C) family protein
           similar to SP|Q06752 Cysteinyl-tRNA synthetase (EC
           6.1.1.16) (Cysteine--tRNA ligase) (CysRS) {Bacillus
           subtilis}; contains Pfam profile PF01406: tRNA
           synthetases class I (C)
          Length = 511

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 20/52 (38%), Positives = 28/52 (53%)
 Frame = +3

Query: 183 VYNCIANQRVPIILNDPHIATWYSCGPTVYESAHIGHASCYVKLDIIQRILK 338
           +YN +  Q+  +I   P     Y CG T Y+ +HIGHA   V  D++ R LK
Sbjct: 10  LYNTMTQQKEVLIPITPGKIGLYVCGITAYDFSHIGHARAAVSFDVLYRYLK 61


>At2g31170.1 68415.m03805 tRNA synthetase class I (C) family protein
           similar to cysteine-tRNA ligase [Escherichia coli]
           GI:41203; contains Pfam profile PF01406: tRNA
           synthetases class I (C)
          Length = 563

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 23/79 (29%), Positives = 36/79 (45%)
 Frame = +3

Query: 249 YSCGPTVYESAHIGHASCYVKLDIIQRILKSFFNIKIVSAMGITXXXXXXXXXGLESKTH 428
           Y CG T Y+ +HIGHA  YV  D++ R LK     ++      T           E +  
Sbjct: 89  YVCGVTAYDLSHIGHARVYVTFDVLLRYLK-HLGYEVSYVRNFTDVDDKIIARAKELEED 147

Query: 429 FTNIAKQYEHEFWLDMASL 485
             ++++++  EF  DM  L
Sbjct: 148 PISLSRRFCEEFNRDMEQL 166


>At3g56300.1 68416.m06258 tRNA synthetase class I (C) family protein
           similar to cysteinyl-tRNA synthetase [Methanococcus
           maripaludis] GI:6599476; contains Pfam profile PF01406:
           tRNA synthetases class I (C)
          Length = 489

 Score = 37.5 bits (83), Expect = 0.005
 Identities = 22/79 (27%), Positives = 37/79 (46%)
 Frame = +3

Query: 249 YSCGPTVYESAHIGHASCYVKLDIIQRILKSFFNIKIVSAMGITXXXXXXXXXGLESKTH 428
           Y CG T Y+ +HIGHA   V  D++ R L+     ++      T         G +    
Sbjct: 35  YVCGITAYDYSHIGHARAAVSFDLLYRYLR-HLGYQVTYVRNFTDVDDKAKNCGEKP--- 90

Query: 429 FTNIAKQYEHEFWLDMASL 485
             +++ ++  E+ LDMA+L
Sbjct: 91  -LDLSNRFCEEYLLDMAAL 108


>At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6
           WD-40 repeats (PF00400); similar to fizzy-related
           protein (GI:5813825) Drosophila melanogaster,
           PID:g2326419;
          Length = 518

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 108 SHVCSLKPYKDTKWLMPNGNPTGIYVYNCIANQRVPIILNDPHIA 242
           S VC LK   D + L   GN   ++V+N  + Q  P++    H A
Sbjct: 336 SEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ--PVLKYSEHTA 378


>At1g55120.1 68414.m06295 beta-fructosidase, putative /
           beta-fructofuranosidase, putative similar to
           beta-fructofuranosidase GI:402740
          Length = 594

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
 Frame = +3

Query: 150 LMPNGNPTGIYV-----YNCIANQRVPIILNDPHIATW 248
           ++PNG P  +Y         + N  VP+ ++DP++  W
Sbjct: 119 ILPNGKPVILYTGIDQNKGQVQNVAVPVNISDPYLREW 156


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,584,712
Number of Sequences: 28952
Number of extensions: 211858
Number of successful extensions: 444
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)