Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0803
         (325 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    26   1.6  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    25   3.7  
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|...    25   3.7  

>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 155 LHLSTHVNIF*IIFIQGVRELKLK 84
           LHLS    +F  +F++G+R L+LK
Sbjct: 291 LHLSFSGVLFIFLFVEGIRILRLK 314


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = +2

Query: 134 LRAWTNVEEWEKNKMLWIILTNKFI 208
           L+   ++ EW+  + +W+ +TNK +
Sbjct: 336 LQPCPSLAEWDALRKVWLFITNKLL 360


>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 570

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 81  AISTNITKKYTRFLYHSISKLVYNIVS 1
           A ST  TKK TR L   +   + NI+S
Sbjct: 445 ATSTGYTKKLTRGLMFMVGYAIANIIS 471


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,047,321
Number of Sequences: 5004
Number of extensions: 16718
Number of successful extensions: 28
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)