Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0803
         (325 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55306| Best HMM Match : DUF361 (HMM E-Value=3)                      29   0.66 
SB_37337| Best HMM Match : PGI (HMM E-Value=0)                         27   3.5  
SB_10745| Best HMM Match : 7tm_1 (HMM E-Value=2.2e-31)                 27   4.6  
SB_50801| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-32)                 27   4.6  
SB_45534| Best HMM Match : 7tm_1 (HMM E-Value=1e-10)                   26   8.1  

>SB_55306| Best HMM Match : DUF361 (HMM E-Value=3)
          Length = 151

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -2

Query: 141 ARKHILDHIYSGSERAKTKAAISTNITKKYT 49
           +R+H+++H Y G+E +   +A+   I+ K T
Sbjct: 29  SRRHVINHYYGGNEASTNFSAVLKEISNKLT 59


>SB_37337| Best HMM Match : PGI (HMM E-Value=0)
          Length = 391

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -2

Query: 141 ARKHILDHIYSGSERAKTKAAISTNITKKYTRF 43
           ARK +LDH+   S  AK   A+STN   K T F
Sbjct: 169 ARKWLLDHLKDKSAVAKHFVALSTN-EPKVTEF 200


>SB_10745| Best HMM Match : 7tm_1 (HMM E-Value=2.2e-31)
          Length = 354

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -3

Query: 152 HLSTHVNIF*IIFIQGVRELKLKQPYQQTLQKNTL 48
           +LS +V++F ++FI   R L +K+P Q    K  L
Sbjct: 100 YLSCYVSLFSLLFISMDRFLAVKRPLQHKAMKGWL 134


>SB_50801| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-32)
          Length = 354

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -3

Query: 152 HLSTHVNIF*IIFIQGVRELKLKQPYQQTLQKNTL 48
           +LS +V++F ++FI   R L +K+P Q    K  L
Sbjct: 100 YLSCYVSLFSLLFISVDRFLAVKRPLQHKAMKGWL 134


>SB_45534| Best HMM Match : 7tm_1 (HMM E-Value=1e-10)
          Length = 548

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 203 TYLSKLSTAFYFFPIPLHLSTHVNIF 126
           +Y   + T FYFFPI     ++V++F
Sbjct: 397 SYTVVIFTKFYFFPIAFMTFSYVHVF 422


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,213,416
Number of Sequences: 59808
Number of extensions: 107597
Number of successful extensions: 208
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 438034835
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)