Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0803
         (325 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05380.1 68418.m00580 prenylated rab acceptor (PRA1) family p...    29   0.94 
At5g56690.1 68418.m07076 F-box family protein contains F-box dom...    28   1.2  
At5g56410.1 68418.m07041 F-box family protein contains F-box dom...    28   1.2  
At5g56440.1 68418.m07045 F-box family protein contains F-box dom...    27   2.9  
At3g56110.1 68416.m06236 prenylated rab acceptor (PRA1) family p...    26   5.0  
At4g10410.1 68417.m01709 hypothetical protein                          26   6.7  
At4g15060.1 68417.m02314 F-box protein-related contains weak sim...    25   8.8  

>At5g05380.1 68418.m00580 prenylated rab acceptor (PRA1) family
           protein weak similarity to prenylated Rab acceptor 1
           (PRA1) [Homo sapiens] GI:4877285; contains Pfam profile
           PF03208: Prenylated rab acceptor (PRA1)
          Length = 217

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 14/22 (63%), Positives = 17/22 (77%)
 Frame = +2

Query: 41  RNLVYFFVMFVDMAALVLALSL 106
           RNL YF V +V + +LVLALSL
Sbjct: 74  RNLPYFKVNYVTIVSLVLALSL 95


>At5g56690.1 68418.m07076 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 402

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -2

Query: 90  TKAAISTNITKKYTRFLYHSISKLVYN 10
           TK AIST++  K  RFL+  + KL Y+
Sbjct: 21  TKVAISTSVLSKQWRFLWMWLPKLKYD 47


>At5g56410.1 68418.m07041 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 503

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -2

Query: 90  TKAAISTNITKKYTRFLYHSISKLVYN 10
           TKAA++T+I  K  +FL+  + KL Y+
Sbjct: 22  TKAAVTTSILSKQWKFLWMRLPKLEYH 48


>At5g56440.1 68418.m07045 F-box family protein contains F-box
          domain Pfam:PF00646
          Length = 430

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 90 TKAAISTNITKKYTRFLYHSISKLVY 13
          TK  +STN+  K  R+L+  + KL Y
Sbjct: 21 TKVVVSTNLLSKRWRYLWKHVPKLDY 46


>At3g56110.1 68416.m06236 prenylated rab acceptor (PRA1) family
           protein weak similarity to prenylated Rab acceptor 1
           (PRA1) [Homo sapiens] GI:4877285; contains Pfam profile
           PF03208: Prenylated rab acceptor (PRA1)
          Length = 209

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 41  RNLVYFFVMFVDMAALVLALSL 106
           +NL YF V +V + +LVLA SL
Sbjct: 71  KNLAYFKVNYVAIVSLVLAFSL 92


>At4g10410.1 68417.m01709 hypothetical protein
          Length = 263

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 96 AKTKAAISTNITKKYTRFLYHSISKLVY 13
          A TK A+ST+I  K   FL+  ++KL +
Sbjct: 4  APTKVAVSTSILSKRWEFLWMWLTKLEF 31


>At4g15060.1 68417.m02314 F-box protein-related contains weak
           similarity to F-box domain Pfam:PF00646
          Length = 572

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 90  TKAAISTNITKKYTRFLYHSISKLVYN 10
           TK A+ST+I  K   FL+  + KL Y+
Sbjct: 191 TKIAVSTSILSKRWEFLWMWLPKLEYH 217


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,106,576
Number of Sequences: 28952
Number of extensions: 79321
Number of successful extensions: 173
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 360538848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)