Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0802
(582 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12) 29 2.8
SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_22269| Best HMM Match : Metallothionein (HMM E-Value=0.89) 29 3.7
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9) 29 3.7
SB_7319| Best HMM Match : SRCR (HMM E-Value=0) 29 3.7
SB_41695| Best HMM Match : Spectrin (HMM E-Value=0) 28 6.4
SB_25130| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_1597| Best HMM Match : PHD (HMM E-Value=1.4e-05) 28 6.4
SB_43638| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.03) 23 8.4
SB_56221| Best HMM Match : AOX (HMM E-Value=3.6) 27 8.5
>SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12)
Length = 1290
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -1
Query: 438 SIPNGKKRMAHKIPRHVKSSSKMPTRHAGQ 349
S P G K H I R ++SS PT H GQ
Sbjct: 989 SHPPGHKGQVHSIHRAQRASSSHPTGHKGQ 1018
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 435 IPN-GKKRMAHKIPRHVKSSSKMPTRHAGQAPTV 337
IP+ G K H IPR ++SS P H GQ ++
Sbjct: 968 IPSPGHKGQVHPIPRAQRASSSHPPGHKGQVHSI 1001
>SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 987
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Frame = +1
Query: 313 HYNTTSYNHSRSLPRMSSWHF--RRRFHVPRYF---MCHPFLSVRNTVLPCLKKQKM 468
H+ T +RSLP SW R HVPR + H F V + LPC Q +
Sbjct: 434 HFRTHGPGVTRSLPHTCSWALPAHYRIHVPRRYPLTTVHMFPGVTRS-LPCTCSQAL 489
>SB_22269| Best HMM Match : Metallothionein (HMM E-Value=0.89)
Length = 251
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/71 (28%), Positives = 30/71 (42%)
Frame = +1
Query: 160 FCGSPSRASTAYIPTGI*SARCTFSPTTSGL*SIWCSSSTNRLCTKLRSHKHYNTTSYNH 339
F P+ T PT + CT P T+ S+ ++ N L R + NTT +N
Sbjct: 103 FDACPTPPGTTACPTPPGTTACTTPPGTTRHNSLHNTTRHNSLHNTTRHNSLPNTTRHNS 162
Query: 340 SRSLPRMSSWH 372
+ R +S H
Sbjct: 163 LHNTTRHNSLH 173
>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
Length = 451
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +2
Query: 347 ACPACRVGILEDDFTCLGILCAILFFPLGILCCLALKNRRCSNC 478
AC +CRV C C ++ + + CC + +CS+C
Sbjct: 233 ACCSCRVVCYSCRVACCS--CRVVCYSCRVACCSCRVHMKCSSC 274
>SB_7319| Best HMM Match : SRCR (HMM E-Value=0)
Length = 957
Score = 28.7 bits (61), Expect = 3.7
Identities = 22/78 (28%), Positives = 33/78 (42%)
Frame = +1
Query: 130 TNCDRATPAVFCGSPSRASTAYIPTGI*SARCTFSPTTSGL*SIWCSSSTNRLCTKLRSH 309
+NC AT A + + A + S T S T+ + CS STN + S
Sbjct: 568 SNCSLATNATASANTTAAQNSDCSL---STNATASANTTAAPNSNCSLSTNATASANTSE 624
Query: 310 KHYNTTSYNHSRSLPRMS 363
N+ SY + S P+M+
Sbjct: 625 ATGNSCSYAFNASAPQMN 642
>SB_41695| Best HMM Match : Spectrin (HMM E-Value=0)
Length = 2322
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/47 (31%), Positives = 18/47 (38%)
Frame = +1
Query: 313 HYNTTSYNHSRSLPRMSSWHFRRRFHVPRYFMCHPFLSVRNTVLPCL 453
HY+ + H R S + R HVP F HPF CL
Sbjct: 1843 HYHAKAKGHKRFSDSASPMFQQTRGHVPIEFFGHPFQLESTETRHCL 1889
>SB_25130| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 304 SVAWYKACLWRRSTIWTIARRWWGKRCTWRI 212
++AW CL +W + +RWW + WRI
Sbjct: 245 TIAWATCCL--TPNLWRV-KRWWWRVGWWRI 272
>SB_1597| Best HMM Match : PHD (HMM E-Value=1.4e-05)
Length = 763
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +3
Query: 123 WRNQL*PSNPRRILRQSLQGFNRIHTHRHLIRQVHLF 233
WR + P RRI + S Q F+R TH L HLF
Sbjct: 254 WRRRRQPEQSRRIAKFSRQVFHRT-THWSLKDSTHLF 289
>SB_43638| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.03)
Length = 136
Score = 23.4 bits (48), Expect(2) = 8.4
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -3
Query: 292 YKACLWRRSTIW 257
Y+AC+WRR W
Sbjct: 98 YEACVWRRVQRW 109
Score = 22.6 bits (46), Expect(2) = 8.4
Identities = 9/23 (39%), Positives = 10/23 (43%)
Frame = -3
Query: 226 CTWRIRCLWVCMRLKPWRDCRRI 158
C WR W C + CRRI
Sbjct: 101 CVWRRVQRWYCFKQMGRTVCRRI 123
>SB_56221| Best HMM Match : AOX (HMM E-Value=3.6)
Length = 361
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -2
Query: 182 ALEGLPQNTAGVARSQLVSPLY*IISSQNK 93
AL G+P G+ARS+L+ LY + S NK
Sbjct: 207 ALFGVPVEGLGLARSELIVVLYHSVRSCNK 236
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,748,430
Number of Sequences: 59808
Number of extensions: 406988
Number of successful extensions: 1064
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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