Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0802
(582 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z54238-6|CAA90999.2| 119|Caenorhabditis elegans Hypothetical pr... 42 2e-04
L23650-1|AAA27955.1| 1076|Caenorhabditis elegans Egg laying defe... 31 0.79
U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of pr... 30 1.0
U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion... 30 1.0
U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion... 30 1.0
AC084158-36|AAK68577.1| 1219|Caenorhabditis elegans Hypothetical... 30 1.4
AC006610-4|AAK85450.1| 246|Caenorhabditis elegans Hypothetical ... 29 3.2
Z82059-5|CAB04879.2| 408|Caenorhabditis elegans Hypothetical pr... 27 7.4
Z47069-3|CAE17781.1| 141|Caenorhabditis elegans Hypothetical pr... 27 7.4
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 27 9.7
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 27 9.7
U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr... 27 9.7
J05067-1|AAB59179.1| 313|Caenorhabditis elegans clb-2 protein. 27 9.7
>Z54238-6|CAA90999.2| 119|Caenorhabditis elegans Hypothetical
protein T28C6.8 protein.
Length = 119
Score = 42.3 bits (95), Expect = 2e-04
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +2
Query: 347 ACPACRVGILEDDFTCLGILCAILFFPLGILCCLALKNRRCSNC 478
+CPAC ++ F+ IL AI FP GI CC+ K C+ C
Sbjct: 10 SCPACTQKKVKSRFSWRAILYAIFCFPCGIYCCMKRKTYYCTQC 53
>L23650-1|AAA27955.1| 1076|Caenorhabditis elegans Egg laying
defective protein 45 protein.
Length = 1076
Score = 30.7 bits (66), Expect = 0.79
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = +3
Query: 147 NPRRILRQSLQGFN--RIHTHRHLIRQVHLFPHHLRAIVHMVLLLHKQALYQATEPQTL* 320
+P ++LR+ + + R T R L +Q F HH+RA+ H+ L ++A+ +
Sbjct: 676 DPEQVLREQRERLDKERAETQRRLQQQEKNFDHHVRAL-HLEELNERRAVMNMRLSEAPK 734
Query: 321 YHQL*SQSELAPHV 362
H L ++ +A +
Sbjct: 735 LHDLYEEARIAKEI 748
>U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of
presynaptic activity protein.
Length = 1409
Score = 30.3 bits (65), Expect = 1.0
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
Frame = -3
Query: 328 WWY---YNVCGSVAWYKACLWRRSTIWTIARRWWGKRCTWRIRCLWVCMRLKPWRDCRRI 158
WWY N+ S CLWRR ++ K+C +C+ M R +
Sbjct: 1247 WWYERLVNITYSPKTKILCLWRRHDDKVHMHKFHTKKCRELYQCMKAAMERAAARGKVNV 1306
Query: 157 RRGLLGHSWFLHYTE 113
LG + +H TE
Sbjct: 1307 EGRALGGEFPVHDTE 1321
>U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion
defective protein3, isoform b protein.
Length = 1408
Score = 30.3 bits (65), Expect = 1.0
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
Frame = -3
Query: 328 WWY---YNVCGSVAWYKACLWRRSTIWTIARRWWGKRCTWRIRCLWVCMRLKPWRDCRRI 158
WWY N+ S CLWRR ++ K+C +C+ M R +
Sbjct: 1247 WWYERLVNITYSPKTKILCLWRRHDDKVHMHKFHTKKCRELYQCMKAAMERAAARGKVNV 1306
Query: 157 RRGLLGHSWFLHYTE 113
LG + +H TE
Sbjct: 1307 EGRALGGEFPVHDTE 1321
>U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion
defective protein3, isoform a protein.
Length = 1409
Score = 30.3 bits (65), Expect = 1.0
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
Frame = -3
Query: 328 WWY---YNVCGSVAWYKACLWRRSTIWTIARRWWGKRCTWRIRCLWVCMRLKPWRDCRRI 158
WWY N+ S CLWRR ++ K+C +C+ M R +
Sbjct: 1247 WWYERLVNITYSPKTKILCLWRRHDDKVHMHKFHTKKCRELYQCMKAAMERAAARGKVNV 1306
Query: 157 RRGLLGHSWFLHYTE 113
LG + +H TE
Sbjct: 1307 EGRALGGEFPVHDTE 1321
>AC084158-36|AAK68577.1| 1219|Caenorhabditis elegans Hypothetical
protein Y69A2AR.31 protein.
Length = 1219
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 238 TTSGL*SIWCSSSTNRLCTKLRSHKHYNTTSYNHSRS 348
T SGL C+SS + C +R H +YN Y S+S
Sbjct: 255 TWSGLGDCQCASSNSSDCHWIRLHTNYNKCIYEISKS 291
>AC006610-4|AAK85450.1| 246|Caenorhabditis elegans Hypothetical
protein C30F12.4 protein.
Length = 246
Score = 28.7 bits (61), Expect = 3.2
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
Frame = +2
Query: 341 VGA--CPACRVGIL--EDD------FTCLGILCAILFFPLGILCCLALKNRRCSNCGAMF 490
VGA CP CR GI+ + D CL + C L L ++C C CG +
Sbjct: 170 VGALVCPKCRKGIIMRKQDRLRKKILMCLAVCCCPLTCCLPLICICCNYVDACGACGKKY 229
Query: 491 G 493
G
Sbjct: 230 G 230
>Z82059-5|CAB04879.2| 408|Caenorhabditis elegans Hypothetical
protein T27E9.9 protein.
Length = 408
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -3
Query: 313 VCGSVAWYKACLWRRSTIWTIARRWWGKRCTWRIRCLWVCMRLKPW 176
+ S+A+ A L + + ++R G+ + + RC W+CM K W
Sbjct: 328 ILSSMAFIFASLIELAVVGYLSRD--GQHGSIKCRCSWLCMNCKDW 371
>Z47069-3|CAE17781.1| 141|Caenorhabditis elegans Hypothetical
protein F36G3.3 protein.
Length = 141
Score = 27.5 bits (58), Expect = 7.4
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 12/60 (20%)
Frame = +2
Query: 350 CPACRVGILEDDFTCLGILCAILF---FPLGILCC----LALKN-----RRCSNCGAMFG 493
CP CR+ I+ + G+L I F F G CC L++ C NC AM G
Sbjct: 77 CPYCRMDIVTRTKSVYGLLTWIFFAALFLFGCWCCCFLPFCLRSCKDIIHTCPNCRAMIG 136
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
K04H4.1b protein.
Length = 1502
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 382 VF*NANSTCGASSDCDYSWW 323
+F N NS C SS DYS+W
Sbjct: 1336 MFCNMNSVCHVSSRNDYSFW 1355
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
K04H4.1a protein.
Length = 1759
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 382 VF*NANSTCGASSDCDYSWW 323
+F N NS C SS DYS+W
Sbjct: 1593 MFCNMNSVCHVSSRNDYSFW 1612
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
protein.
Length = 1758
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 382 VF*NANSTCGASSDCDYSWW 323
+F N NS C SS DYS+W
Sbjct: 1592 MFCNMNSVCHVSSRNDYSFW 1611
>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical protein
F30H5.3 protein.
Length = 1599
Score = 27.1 bits (57), Expect = 9.7
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 136 CDRATPAVFCGSPSRASTAYIPTGI*SARCTFSPTTSGL*SIWCSSS 276
CDR + V G+P + + + P+G +CTFS + + +C SS
Sbjct: 1411 CDRGSAYVVNGTPKQCTASPCPSGY---KCTFSKKSK---NYYCCSS 1451
>J05067-1|AAB59179.1| 313|Caenorhabditis elegans clb-2 protein.
Length = 313
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 382 VF*NANSTCGASSDCDYSWW 323
+F N NS C SS DYS+W
Sbjct: 147 MFCNMNSVCHVSSRNDYSFW 166
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,323,861
Number of Sequences: 27780
Number of extensions: 294799
Number of successful extensions: 882
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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