Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0802
         (582 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   6.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.9  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +2

Query: 356 ACRVGILEDDFTCLG 400
           AC VG+LE  F CLG
Sbjct: 151 AC-VGLLERAFRCLG 164


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -1

Query: 396  RHVKSSSKMPTRHAGQAPTVIIAGGIIMFVAP*LGTKPVC 277
            R+V+ S  MPTR++    + + A      +AP   T   C
Sbjct: 911  RNVRQSM-MPTRYSTTKSSAVTATNASSMIAPVALTAATC 949


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = +3

Query: 159 ILRQSLQGFNRIHTHRHLIRQVHLFPHH 242
           I +++LQ  + +  H H ++   +  HH
Sbjct: 133 IKQETLQRHHHLQNHHHHLQSTAVQDHH 160


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,908
Number of Sequences: 438
Number of extensions: 3237
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)