Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0802
(582 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g73840.1 68414.m08549 hydroxyproline-rich glycoprotein family... 31 0.42
At3g20410.1 68416.m02585 calmodulin-domain protein kinase isofor... 30 1.3
At2g43800.1 68415.m05445 formin homology 2 domain-containing pro... 29 2.3
At4g01270.1 68417.m00168 zinc finger (C3HC4-type RING finger) fa... 29 3.0
At1g69350.1 68414.m07958 pentatricopeptide (PPR) repeat-containi... 28 5.2
At1g55325.1 68414.m06320 expressed protein 28 5.2
At1g54575.1 68414.m06224 expressed protein 28 5.2
At4g27320.1 68417.m03920 universal stress protein (USP) family p... 27 6.9
At2g36330.1 68415.m04459 integral membrane protein, putative con... 27 6.9
At1g67660.1 68414.m07721 expressed protein 27 6.9
At1g32090.1 68414.m03949 early-responsive to dehydration protein... 27 6.9
At3g59030.1 68416.m06579 transparent testa 12 protein (TT12) / m... 27 9.1
At3g42320.1 68416.m04373 hypothetical protein various predicted ... 27 9.1
At1g79640.1 68414.m09286 protein kinase family protein contains ... 27 9.1
At1g60340.1 68414.m06794 apical meristem formation protein-relat... 27 9.1
>At1g73840.1 68414.m08549 hydroxyproline-rich glycoprotein family
protein similar to proline-rich protein precursor
GB:AAC34889 [Glycine max]
Length = 388
Score = 31.5 bits (68), Expect = 0.42
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Frame = -2
Query: 173 GLPQNTAGVARSQL---VSPLY*IISSQNK*WRYVI*RNLLKCLVRKVFQTQFMIKVV 9
GLP N AG+ +SQL +S + +I ++ R ++ RN L L + +FQ Q M+ +V
Sbjct: 11 GLPANLAGMTKSQLYDIMSQMKTLIDQNHQQAREILIRNPL--LTKALFQAQIMLGMV 66
>At3g20410.1 68416.m02585 calmodulin-domain protein kinase isoform 9
(CPK9) identical to calmodulin-domain protein kinase
CDPK isoform 9 [Arabidopsis thaliana]
gi|1399265|gb|AAB03242
Length = 541
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Frame = +2
Query: 125 EKP-TVTEQPPPY-SAAVPPGLQPHT 196
EKP +V QPPP+ +AA PGL P T
Sbjct: 47 EKPGSVNSQPPPWRAAAAAPGLSPKT 72
>At2g43800.1 68415.m05445 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 894
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Frame = +2
Query: 131 PTVTEQPPPYSAAV---PPGLQPHTY 199
P VT PPPY V PP PHT+
Sbjct: 36 PVVTAAPPPYQPPVSSQPPSPSPHTH 61
>At4g01270.1 68417.m00168 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 506
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 232 SPTTSGL*SIWCSSSTNRLCTKLRSHKHYNTTSYNHSRSLPR 357
SP ++G +IW SS TNR + H N + + S+PR
Sbjct: 401 SPYSNGSGNIWQSSGTNRNLGRWSKHGERNEATPSLGGSVPR 442
>At1g69350.1 68414.m07958 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535: PPR repeat
Length = 787
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 400 TEAREIVF*NANSTCGASSDCDYSWWYYNVCGS 302
T+ E+VF N S CG S + +Y+N+ S
Sbjct: 601 TKPNEVVFMNVLSACGHSGSVEEGKYYFNLMKS 633
>At1g55325.1 68414.m06320 expressed protein
Length = 1921
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = -1
Query: 483 APQFEHLLFFKARQHSIPNGKKRMAHKIPRHVKSSSKMPTRHAGQAPTVIIAGGI 319
+P F L+ K S+ N +R++ +P SS +P+R + + GI
Sbjct: 1351 SPSFNELVILKDTAFSVYNKARRISRGMPNDAFFSSSLPSRSSSALTPMNSISGI 1405
>At1g54575.1 68414.m06224 expressed protein
Length = 102
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = -1
Query: 450 ARQHSIPNGKKRMAHKIPR--HVKSSSKMPTRHAGQAPTVIIAGG 322
+R++ + +K KIP+ H S K+ + + PT+I+AGG
Sbjct: 34 SREYEGESKQKYTTKKIPKWKHNDSERKIGQKQNNETPTMIVAGG 78
>At4g27320.1 68417.m03920 universal stress protein (USP) family
protein low similarity to ER6 protein [Lycopersicon
esculentum] GI:5669654, early nodulin ENOD18 [Vicia
faba] GI:11602747; contains Pfam profile PF00582:
universal stress protein family
Length = 260
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +2
Query: 110 LFSIMEKPTVTEQPPPYSAAVPPGLQP 190
LF P + PPP SAA PG QP
Sbjct: 86 LFGADWGPLPLQTPPPPSAATDPGAQP 112
>At2g36330.1 68415.m04459 integral membrane protein, putative
contains 4 transmembrane domains; contains Pfam PF04535
: Domain of unknown function (DUF588); similar to
putative ethylene responsive element binding protein
(GI:22135858) [Arabidopsis thaliana]
Length = 431
Score = 27.5 bits (58), Expect = 6.9
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +3
Query: 207 HLIRQVHLFPHHLRAIVHMVL 269
HL+++ HL HHLR + ++
Sbjct: 355 HLVKEKHLISHHLRPLFEFII 375
>At1g67660.1 68414.m07721 expressed protein
Length = 355
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = -2
Query: 473 LNIFCFLRQGSTVF--LTERKGWHI 405
+N++C+ R GSTVF + +R W I
Sbjct: 262 VNLYCWTRNGSTVFRVMRDRSYWRI 286
>At1g32090.1 68414.m03949 early-responsive to dehydration
protein-related / ERD protein-related similar to ERD4
protein (early-responsive to dehydration stress)
[Arabidopsis thaliana] GI:15375406; contains Pfam
profile PF02714: Domain of unknown function DUF221
Length = 806
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/43 (23%), Positives = 22/43 (51%)
Frame = +1
Query: 394 PRYFMCHPFLSVRNTVLPCLKKQKMFKLWSDVWLSCHYKSLFK 522
P +++CH + NT +K++ + W D ++ H ++ K
Sbjct: 229 PEHYLCHQAVYNANTYAKLVKQRAKLQRWFDYYVLKHQRNPHK 271
>At3g59030.1 68416.m06579 transparent testa 12 protein (TT12) /
multidrug transporter-like protein similar to ripening
regulated protein DDTFR18 [Lycopersicon esculentum]
GI:12231296, putative multidrug efflux protein NorM -
Vibrio parahaemolyticus, EMBL:AB010463; contains Pfam
profile PF01554: Uncharacterized membrane protein
family; identical to cDNA multidrug transporter-like
protein (tt12) GI:13624642, SP|Q9LYT3 TRANSPARENT TESTA
12 protein {Arabidopsis thaliana}, multidrug
transporter-like protein [Arabidopsis thaliana]
GI:13624643
Length = 507
Score = 27.1 bits (57), Expect = 9.1
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = -3
Query: 256 TIARRWWGKRCTWRIRCLW 200
T+ RWW K W + LW
Sbjct: 38 TVTPRWWLKLAVWESKLLW 56
>At3g42320.1 68416.m04373 hypothetical protein various predicted
Helicases, Arabidopsis thaliana
Length = 541
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = +1
Query: 421 LSVRNTVLPCLKKQKMFKLW----SDVWLSCHYKSLFKLFNTMY 540
L R VLP LK F LW SD LS H++ + +NT++
Sbjct: 2 LYARQIVLPSLKDSPEF-LWHLLTSDDELSKHFRENIRAYNTLF 44
>At1g79640.1 68414.m09286 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 694
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 159 ILRQSLQGFNRIHTHRHLIRQV 224
ILR++L+G + +H H H+ R V
Sbjct: 116 ILREALKGLDYLHQHGHIHRDV 137
>At1g60340.1 68414.m06794 apical meristem formation protein-related
contains similarity to CUC1 [Arabidopsis thaliana]
gi|12060422|dbj|BAB20598 and NAM [Petunia x hybrida]
gi|1279640|emb|CAA63101
Length = 371
Score = 27.1 bits (57), Expect = 9.1
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -3
Query: 370 ANSTCGASSDCDYSWW 323
AN TCG S CD +W
Sbjct: 236 ANGTCGESDKCDGGYW 251
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,389,855
Number of Sequences: 28952
Number of extensions: 268997
Number of successful extensions: 876
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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