Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0800
         (538 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)                      130   9e-31
SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)                   110   6e-25
SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)                       51   7e-07
SB_51568| Best HMM Match : RNA_pol_Rpa2_4 (HMM E-Value=2.3)            30   1.4  
SB_45717| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_11623| Best HMM Match : ABC1 (HMM E-Value=0)                        29   2.4  
SB_44356| Best HMM Match : Osteopontin (HMM E-Value=1)                 29   3.2  
SB_3247| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  
SB_7872| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.2  
SB_31792| Best HMM Match : DUF1373 (HMM E-Value=2.5)                   27   7.3  
SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_19397| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_32938| Best HMM Match : DUF204 (HMM E-Value=0.6)                    27   9.7  

>SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 855

 Score =  130 bits (313), Expect = 9e-31
 Identities = 67/109 (61%), Positives = 79/109 (72%)
 Frame = +3

Query: 114 EMETQPAEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPS 293
           +M+    + E   FQAE+ ++M LIIN+ Y NKEIFLRELISNSSDALDKIR  SLTD +
Sbjct: 68  QMKELRDKAEKHEFQAEVNRMMKLIINSLYRNKEIFLRELISNSSDALDKIRLMSLTDKT 127

Query: 294 KLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKA 440
             DSG EL IKI  +K    L + DTGIGMTK +L+ NLGTIAKSGT A
Sbjct: 128 AFDSGDELSIKIKADKENNILHVTDTGIGMTKEELIKNLGTIAKSGTIA 176


>SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)
          Length = 739

 Score =  110 bits (265), Expect = 6e-25
 Identities = 59/151 (39%), Positives = 99/151 (65%), Gaps = 4/151 (2%)
 Frame = +3

Query: 93  AVKKMPEEMETQPAEVETFAFQAEIAQLMSLIINTFYSN-KEIFLRELISNSSDALDKIR 269
           +V+ + E  + +  E  +     ++ + + L++++  +   ++F+RE+ISN+SDAL+K+R
Sbjct: 43  SVRLLSETTDDRSVEESSETSGEDVEEPLELLMSSQKTKLSQVFIREVISNASDALEKVR 102

Query: 270 YESLTDPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKAFME 449
           +  LT     ++   L I I  ++  GT TI D G+GMT+ +L+++LG IAKSG+K FME
Sbjct: 103 HFFLTGKDVSETETSLEIMIETDQEAGTFTIQDNGVGMTEEELMDHLGVIAKSGSKVFME 162

Query: 450 ALQAGADIS---MIGQFGVGFYSSYLVADRV 533
            L+  A  S   +IGQFGVGFYS+++VAD+V
Sbjct: 163 KLKNEARSSHENIIGQFGVGFYSTFMVADKV 193


>SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 581

 Score = 50.8 bits (116), Expect = 7e-07
 Identities = 22/26 (84%), Positives = 26/26 (100%)
 Frame = +3

Query: 456 QAGADISMIGQFGVGFYSSYLVADRV 533
           +AGADISMIGQFGVGFYS+YLVA++V
Sbjct: 59  KAGADISMIGQFGVGFYSAYLVAEKV 84


>SB_51568| Best HMM Match : RNA_pol_Rpa2_4 (HMM E-Value=2.3)
          Length = 375

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 22/69 (31%), Positives = 33/69 (47%)
 Frame = +3

Query: 60  PSSHXV*IKQKAVKKMPEEMETQPAEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELIS 239
           PS   V    KA  K  +E ET+P E+   +F+ +   ++        S+  +FLR  I 
Sbjct: 71  PSGSSVSESGKAKTKKEKEKETKPFEIALVSFEEDEFPMI-------LSDDSLFLRGFIQ 123

Query: 240 NSSDALDKI 266
             SDA +KI
Sbjct: 124 LRSDASEKI 132


>SB_45717| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 721

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/57 (21%), Positives = 31/57 (54%)
 Frame = +3

Query: 291 SKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKAFMEALQA 461
           +K+  G+E+   +  ++NE     ++  +G ++ D++ N+G      T++ +E  +A
Sbjct: 265 AKISDGQEIKFSVFIDENEYRSICLNLQVGPSEPDVLKNIGVTRMPETRSNVENCRA 321


>SB_11623| Best HMM Match : ABC1 (HMM E-Value=0)
          Length = 780

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
 Frame = +2

Query: 314 AVHQDHSQQERGHSYDHRYRYWYDQ----GRFGEQFGNHREIWY*SFHGGSSSRCRHQHD 481
           AV   H+   RGHS+      W       G F + FG+    W    + G+S  CR    
Sbjct: 150 AVGVPHAHSYRGHSFRRGATTWAFHLGIPGEFIQVFGD----WASDAYRGNSL-CRANCQ 204

Query: 482 WTVRCWLLLQ 511
           W +RC ++ Q
Sbjct: 205 WLIRCVVIFQ 214


>SB_44356| Best HMM Match : Osteopontin (HMM E-Value=1)
          Length = 365

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
 Frame = +3

Query: 231 LISNSSDALDKIRY--ESLTDPSKLDSGKELYIKI--IPNKNEGTLTIIDTGIGMTKADL 398
           LIS+S +  ++ R+  E +   S+L S + +Y +     N+N   L I+D+ I   +A+ 
Sbjct: 283 LISSSDEENNQERFKEEKIATSSQLSS-ERVYQRTQEANNQNNRLLGIVDSNILKARANA 341

Query: 399 VNNLGTIAKSGTKAFMEALQAGA 467
            N LG  A S +++  +  Q  A
Sbjct: 342 GNKLGKSAMSRSRSAAQRRQLAA 364


>SB_3247| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = +3

Query: 168 AQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPS-KLDSGKELYIKIIPNKN 344
           AQ+  L+ ++ + N +    ++ +  S ALD++ YE   DP  K DS ++++I +  N+ 
Sbjct: 20  AQVCELLKDSQFLNMDATDAQIHTVVSGALDRLHYEK--DPCVKYDSNRKVWIYLHRNRT 77

Query: 345 E 347
           E
Sbjct: 78  E 78


>SB_7872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 249 DALDKIRYESLTDPSKLDSGKELYIKIIPNKNE 347
           DAL K+R +   +PS +D G E+ ++    +N+
Sbjct: 32  DALSKLRQKEYAEPSGIDEGDEVLLRQTRRENK 64


>SB_31792| Best HMM Match : DUF1373 (HMM E-Value=2.5)
          Length = 696

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 308 QRAVHQDHSQQERGHSYDHRYRYWYDQGRFGEQFGNHR 421
           QR  H+ H  +   H + HR+R W ++ R+ E +   R
Sbjct: 568 QRYTHRRHRHR---HHHPHRHRGWAERDRYREAYVTDR 602


>SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1488

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -3

Query: 134  RWLCLHFFRHFLYCFLFNSHXMTRGFLTHVFQSAKYRTLVS 12
            R +  H     + C LF SH +TR   +H       RTL S
Sbjct: 993  RVISSHTLSRHVTCTLFQSHPVTRTLSSHTLSRPVTRTLSS 1033


>SB_19397| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 249

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +3

Query: 318 YIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTI--AKSGTKAFMEAL 455
           Y++ +PN    TL + D G    +AD +N L TI   +S +  F E++
Sbjct: 59  YLQGLPNDVIVTLAVKDEGSTQLRADAINALHTIIHIQSPSMVFRESM 106


>SB_32938| Best HMM Match : DUF204 (HMM E-Value=0.6)
          Length = 433

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -3

Query: 533 HAVSDQVTGVEANTELSNHADVGTCLKSLHESFSTRFRDGSQIV 402
           H ++ QV     + + + H   G CLKSL   F  + RDG   V
Sbjct: 384 HEMNVQVQSKLYSVKDNTHVTWGACLKSL--DFECKMRDGQSFV 425


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,308,754
Number of Sequences: 59808
Number of extensions: 341658
Number of successful extensions: 991
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)