Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0797
         (509 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O66434 Cluster: 50S ribosomal protein L2; n=113; cellul...    33   3.8  
UniRef50_Q2J7E5 Cluster: Putative uncharacterized protein; n=2; ...    32   8.7  

>UniRef50_O66434 Cluster: 50S ribosomal protein L2; n=113; cellular
           organisms|Rep: 50S ribosomal protein L2 - Aquifex
           aeolicus
          Length = 304

 Score = 33.1 bits (72), Expect = 3.8
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = -2

Query: 208 TVSMTTIAQTAMISSGKAAVARAVSWTRPSALDVASGGGDHQHGEGNEG 62
           TV    +A+  ++  GKA  AR + W RP     A    DH HG G EG
Sbjct: 218 TVGRVGLAEHELVKLGKAGRARWLGW-RPHTRGTAMNPVDHPHG-GGEG 264


>UniRef50_Q2J7E5 Cluster: Putative uncharacterized protein; n=2;
           Frankia|Rep: Putative uncharacterized protein - Frankia
           sp. (strain CcI3)
          Length = 156

 Score = 31.9 bits (69), Expect = 8.7
 Identities = 20/46 (43%), Positives = 25/46 (54%)
 Frame = -2

Query: 184 QTAMISSGKAAVARAVSWTRPSALDVASGGGDHQHGEGNEGSVESH 47
           +TA IS  KA  ARA  W  P+ L   +GG  H  GE + G  E+H
Sbjct: 49  ETADISVDKACAARA--WAPPAHLVSHTGGEGHAGGEAHAGG-EAH 91


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 344,282,338
Number of Sequences: 1657284
Number of extensions: 4665724
Number of successful extensions: 14948
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14934
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30946432294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)