Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0797
         (509 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0109 + 795842-796065,796086-796302,796480-796533                 29   1.6  
03_05_0713 - 27070063-27070126,27070202-27070290,27070369-270704...    29   2.2  
06_03_0909 - 25870852-25870933,25871175-25871336,25871437-258715...    28   3.8  
01_06_1793 - 39916024-39916824                                         28   5.0  
05_04_0233 + 19265553-19265703,19265805-19265826,19266788-192669...    27   6.6  
12_01_1061 + 10964571-10964927,10965393-10965425,10965865-109659...    27   8.8  
04_01_0208 + 2596110-2596928                                           27   8.8  

>01_01_0109 + 795842-796065,796086-796302,796480-796533
          Length = 164

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -2

Query: 196 TTIAQTAMISSGKAAVARAVSWTRPSALDVASGGGDHQHGEGNEG 62
           +++A TA   S  AA   A SW      +V  G G+H+ G  + G
Sbjct: 53  SSVAATADSESSPAANLPARSWRDADGAEVGGGEGEHRGGVDHRG 97


>03_05_0713 -
           27070063-27070126,27070202-27070290,27070369-27070428,
           27071110-27071215,27071309-27071428,27072340-27072476,
           27072561-27072647,27073660-27073956
          Length = 319

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -2

Query: 169 SSGKAAVARAVSWTRPSALDVASGGGDHQHGEGNEGSVE 53
           ++  AA   A +  R +  D A+GGGD+   +G++G+ E
Sbjct: 5   AAAAAAAQDADAVMRDAPADAAAGGGDNDDDDGDDGTEE 43


>06_03_0909 -
           25870852-25870933,25871175-25871336,25871437-25871558,
           25871762-25871982,25872537-25872675,25873290-25873513,
           25873830-25873941,25874411-25874611,25874686-25874853
          Length = 476

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -2

Query: 166 SGKAAVARAVSWTRPSALDVASGGGDHQHGEGNEGSVESH 47
           +GKA +   V+   P   +V  G  +HQ+ +  EG+V ++
Sbjct: 65  NGKAVIVSWVTVAEPGTSEVLYGKNEHQYDQRVEGTVTNY 104


>01_06_1793 - 39916024-39916824
          Length = 266

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = -2

Query: 169 SSGKAAVARAVSWTRPSALDVASGGGDHQHGEGNEGSVESHXXXXXVFRKRTS 11
           SSGK++ + +  +    +   A GGGD ++G    G+  S       + + TS
Sbjct: 7   SSGKSSSSSSQYYAGSDSSSFAGGGGDDRYGRAGSGNGRSPWTTSEEYPRYTS 59


>05_04_0233 +
           19265553-19265703,19265805-19265826,19266788-19266914,
           19267814-19267904,19268008-19268097,19268194-19268294,
           19268945-19269081,19271315-19271511,19271600-19271621,
           19272343-19272466,19273158-19273248,19273378-19273467,
           19273562-19273662,19278576-19278716
          Length = 494

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 178 AMISSGKAAVARAVSWTRPSALDVASGGGD 89
           A +   + ++A +  W  P ALD A GGG+
Sbjct: 247 ADLKDRRCSMASSQCWENPPALDPAGGGGE 276


>12_01_1061 +
           10964571-10964927,10965393-10965425,10965865-10965909,
           10966209-10966220
          Length = 148

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 73  PRHVGGRRLRWLHQERMVESRI 138
           PRH+ GR  RW HQ   +++ +
Sbjct: 89  PRHLSGRLHRWRHQRLCLDTNL 110


>04_01_0208 + 2596110-2596928
          Length = 272

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = -2

Query: 133 WTRPSALDVASGGGD--HQHGEGNEG 62
           W RP+A +   GGG+    HGE  +G
Sbjct: 199 WRRPAAWEREEGGGERARDHGEARDG 224


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,413,613
Number of Sequences: 37544
Number of extensions: 134283
Number of successful extensions: 541
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)