Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0797
         (509 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49291| Best HMM Match : Herpes_UL69 (HMM E-Value=4.5)               30   0.96 
SB_52484| Best HMM Match : AbfB (HMM E-Value=0.011)                    29   2.9  
SB_56718| Best HMM Match : Curto_V3 (HMM E-Value=7.9)                  27   9.0  
SB_1591| Best HMM Match : 7tm_1 (HMM E-Value=6.8e-06)                  27   9.0  

>SB_49291| Best HMM Match : Herpes_UL69 (HMM E-Value=4.5)
          Length = 491

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -2

Query: 193 TIAQTAMISSGKAAVARAVSWTRPSALDVASGGGDHQHGEGNEGSVESH 47
           T   T  I+S  A+ +  + W     LD  SGGGD   G G++     H
Sbjct: 154 TTGTTPSITSATASAS--LKWQVHQILDYVSGGGDDGEGNGDDDDDHDH 200


>SB_52484| Best HMM Match : AbfB (HMM E-Value=0.011)
          Length = 782

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 20/52 (38%), Positives = 25/52 (48%)
 Frame = -2

Query: 214 QTTVSMTTIAQTAMISSGKAAVARAVSWTRPSALDVASGGGDHQHGEGNEGS 59
           QT  S TT   T   SSG  A+  A +W+  SA   A GGG      G+ G+
Sbjct: 204 QTVASHTTGGSTGAPSSG--AMVGATTWSASSAGASAGGGGGVGTTGGSTGA 253


>SB_56718| Best HMM Match : Curto_V3 (HMM E-Value=7.9)
          Length = 177

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 423 YEHSCIYTLSYCEYCIKGVVNPIIYQ*LLALF 328
           ++    Y LSYC   +   +NP++Y  L+  F
Sbjct: 64  HQDKAAYILSYCLLYLSHAINPLLYTSLMRQF 95


>SB_1591| Best HMM Match : 7tm_1 (HMM E-Value=6.8e-06)
          Length = 286

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 423 YEHSCIYTLSYCEYCIKGVVNPIIYQ*LLALF 328
           ++    Y LSYC   +   +NP++Y  L+  F
Sbjct: 173 HQDKAAYILSYCLLYLSHAINPLLYTSLMRQF 204


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,755,950
Number of Sequences: 59808
Number of extensions: 150031
Number of successful extensions: 395
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)