Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0797
         (509 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    28   0.065
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    24   0.79 
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               23   1.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   9.8  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    21   9.8  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 27.9 bits (59), Expect = 0.065
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -3

Query: 435 QTDYYE--HSCIYTLSYCEYCIKGVVNPIIY 349
           ++DYY   +  +Y LS C Y     +NPI+Y
Sbjct: 298 ESDYYPDLNEWLYILSGCLYYFSTTINPILY 328


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 24.2 bits (50), Expect = 0.79
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 408 IYTLSYCEYCIKGVVNPIIYQ*LLALF 328
           +Y L+ C Y     +NPI+Y  + A +
Sbjct: 297 VYPLTGCLYYFSTTINPILYNVMSAKY 323


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -1

Query: 50  SCFSCCSVSQAHLVPN 3
           SCF  C++ ++H++ N
Sbjct: 76  SCFITCALEKSHIIQN 91


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 330 TKLGATGKLLDSPHL 374
           T  G  G L+D+PH+
Sbjct: 490 TTAGTIGILMDAPHI 504


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 191 HSPDRYDILRKSRRSPSCI 135
           H  DRY  L+++ R P  I
Sbjct: 22  HQSDRYSKLKRNWRKPKGI 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,759
Number of Sequences: 438
Number of extensions: 1258
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)