Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0796
         (417 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    51   8e-08
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    28   0.67 
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    26   2.0  
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|...    25   3.6  
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    25   4.7  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    24   8.2  
SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    24   8.2  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    24   8.2  

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 50.8 bits (116), Expect = 8e-08
 Identities = 23/53 (43%), Positives = 31/53 (58%)
 Frame = +1

Query: 259 LHIAGLYGLYLCFTSAKLATSVFAIVLFFLGNFGITAGAHRLWSHNGYKVKLP 417
           L +  +YG++   T  +  T +FAI+ +     GITAG HRLWSH  YK K P
Sbjct: 73  LPMIAIYGVFT--TPLQTKTLIFAIIYYAYSGLGITAGYHRLWSHRAYKAKKP 123


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 27.9 bits (59), Expect = 0.67
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 130 SVDKTNETEYLKDNHVDYEKLIAPQASPIKHKIVVM 237
           S+   N  EYL D+ V+  KL   +  P+K K++ +
Sbjct: 28  SLTSINSAEYLYDSFVEISKLPLEKKLPLKWKLITV 63


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +1

Query: 319 SVFAIVLFFLGNFGITAGAHRLWSH 393
           SVF+IVL+FL N   TAG    W++
Sbjct: 632 SVFSIVLYFLTNLKRTAGG--FWTY 654


>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 643

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 359 PKFPRKNNTIAKTDVANFAEVK 294
           P FP +N T  + +VANF  +K
Sbjct: 205 PAFPDENITALQKNVANFTSIK 226


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +1

Query: 124 PNSVDKTNETEYLKDNHVDYE---KLIAPQASPIKHKIVVM 237
           PN V   N +  +  NH+D E   KLI  +   ++ +I V+
Sbjct: 589 PNQVSMPNISNIVSTNHLDVETQMKLIMDENQRLREQIAVL 629


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = +1

Query: 124 PNSVDKTNETEYLKDNHVDYEKLIAPQASPIKHKIVVMN 240
           PNSV    E  +LK    D    I P  SP     V +N
Sbjct: 198 PNSVSIVEENPFLKKIIYDIHHNIYPSTSPNPTSPVTLN 236


>SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 115 KMPPNSVDKTNETEYLKDNHVDYEK 189
           K+   SV  T ET ++K+NH D ++
Sbjct: 4   KIRSQSVLNTLETFFIKENHYDMQR 28


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = +1

Query: 124 PNSVDKTNETEYLKDNHVDYEKLIAPQASPIKHKIVVMN 240
           PNSV    E  +LK    D    I P  SP     V +N
Sbjct: 198 PNSVSIVEENPFLKKIIYDIHHNIYPSTSPNPTSPVTLN 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,612,384
Number of Sequences: 5004
Number of extensions: 29581
Number of successful extensions: 80
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)