Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0796
         (417 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0349 - 3082700-3083407                                           28   2.6  
05_01_0372 - 2913518-2916562,2916674-2917528                           28   2.6  
08_01_0052 + 361505-361969,362270-362348,362816-362880,363069-36...    27   4.6  
07_01_0548 - 4061829-4062956                                           27   6.0  
03_02_0693 - 10441253-10441294,10441404-10441511,10441594-104416...    27   6.0  
01_05_0810 - 25435193-25435323,25435434-25436360,25436459-254369...    27   8.0  

>08_01_0349 - 3082700-3083407
          Length = 235

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 304 AKLATSVFAIVLFFLGNFGITAGAHRLWSHNGYKVKLP 417
           A+L+   FAI++ FL  F +   + R +SH G  V +P
Sbjct: 104 AELSVKFFAILVCFLLAFLLNVQSIRYYSHTGLLVNVP 141


>05_01_0372 - 2913518-2916562,2916674-2917528
          Length = 1299

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +2

Query: 305 QNWLHRFLLLCYSS 346
           Q+W H+ LLLCYSS
Sbjct: 855 QSWRHQMLLLCYSS 868


>08_01_0052 +
           361505-361969,362270-362348,362816-362880,363069-363236,
           363731-364171
          Length = 405

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -1

Query: 150 FICFIH*IRRHFSNLDFNFIYLL*VI*FYNTKYLLKKFCS 31
           F+C +  +R H  NLD  F        F +  Y L++FCS
Sbjct: 159 FVCVVWYLRSHLFNLDLQFF-------FNHVVYRLQQFCS 191


>07_01_0548 - 4061829-4062956
          Length = 375

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 115 KMPPNSVDKTNETEYLKDNHVDYE 186
           ++PP   DK  +  +L DNH D+E
Sbjct: 180 EVPPAIFDKKIDALFLNDNHFDFE 203


>03_02_0693 -
           10441253-10441294,10441404-10441511,10441594-10441677,
           10441765-10443062,10443111-10444804,10444890-10444957,
           10445057-10445186,10445292-10445415,10445551-10445711,
           10446714-10446868
          Length = 1287

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 118 MPPNSVDKTNETEYLKDNHVDYEKLIAPQASPI 216
           M PNS D     E   D+H  Y  + +PQA P+
Sbjct: 394 MVPNSSDVVPAEEENNDHHQGYVCVPSPQAKPV 426


>01_05_0810 -
           25435193-25435323,25435434-25436360,25436459-25436987,
           25437089-25437190
          Length = 562

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 246 YHVHHYNFVFDGRGLG 199
           +H+H YNF   GRG+G
Sbjct: 465 FHLHGYNFFVVGRGVG 480


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,575,933
Number of Sequences: 37544
Number of extensions: 163773
Number of successful extensions: 321
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)