Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0795
         (531 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    27   1.3  
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces...    27   1.7  
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    27   2.3  
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    27   2.3  
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe...    27   2.3  
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa...    26   4.0  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    25   7.0  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    25   9.3  
SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyce...    25   9.3  

>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/41 (34%), Positives = 16/41 (39%)
 Frame = +3

Query: 219 FVRSTISFKANPKNFARLPQQKIGSVPCAVGFSLFTWLGFY 341
           + R  I     P   ARLP   IGS     G     W G+Y
Sbjct: 433 YFRQVIKAGNKPAPEARLPPMMIGSFLFPAGIFWLAWSGYY 473


>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 538

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +3

Query: 264 ARLPQQKIGSVPCAVGFSLFTWLGFY 341
           ARLP   IGSV    G     W G+Y
Sbjct: 406 ARLPPMMIGSVLFPAGIFWLAWSGYY 431


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = +3

Query: 219 FVRSTISFKANPKNFARLPQQKIGSVPCAVGFSLFTWLGFY 341
           + R  ++    P   ARLP   IG      G    +W G+Y
Sbjct: 429 YYRRCLALGGKPDPEARLPPMMIGCFMFPAGIFWLSWSGYY 469


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +3

Query: 243 KANPKNFARLPQQKIGSVPCAVGFSLFTWLGFY 341
           K  P   ARLP   IG +   +G     W G Y
Sbjct: 377 KGRPVPEARLPSMMIGCIVFPIGIFWLAWTGNY 409


>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -3

Query: 193 TDMLELKNAYYITLMFKIYKKFENVIQLIFQNLNLKLV 80
           TD+L+   AY   +  KI ++++N++Q  F +L  K V
Sbjct: 365 TDLLKKAFAYTSEVFEKIVEEYKNIVQNDFYDLMFKRV 402


>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
           Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -3

Query: 331 SHVNNENPTAHGTLPIFC*GSLAKFFGLALKLIVDLTKRTNKFLYLT 191
           S  +NE  T HG    F    ++ +   +LK I +LT  TN+ LYL+
Sbjct: 344 SKTSNEIVTTHG----FAKNQVSLWKYPSLKNIANLTAHTNRVLYLS 386


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1325

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 7/19 (36%), Positives = 16/19 (84%)
 Frame = -3

Query: 145  KIYKKFENVIQLIFQNLNL 89
            ++Y +F+N + L++QN+N+
Sbjct: 1079 RLYLQFKNELDLVWQNINI 1097


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 181 ELKNAYYITLMFKIYKKFE 125
           EL N+  I  +FKIYK FE
Sbjct: 580 ELDNSKSIFFLFKIYKVFE 598


>SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 433 YCMWLLDKP 459
           YCMW+ DKP
Sbjct: 50  YCMWMADKP 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,118,692
Number of Sequences: 5004
Number of extensions: 43471
Number of successful extensions: 97
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)