Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0795
         (531 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61460.1 68418.m07712 structural maintenance of chromosomes (...    28   4.5  
At2g38950.1 68415.m04786 transcription factor jumonji (jmj) fami...    27   7.9  

>At5g61460.1 68418.m07712 structural maintenance of chromosomes
           (SMC) family protein very strong similarity to SMC-like
           protein (MIM) [Arabidopsis thaliana] GI:5880614;
           contains Pfam profile PF02463: RecF/RecN/SMC N terminal
           domain
          Length = 1057

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = +3

Query: 342 KKTSAEDELIHTIKHCILFIQ--RYDYIKAEQLLHVALRQAQQMQHQLAITYIYDVMANL 515
           K T+  DEL +TIK     I   R      EQ+  +A R  QQ++ +LA +++YDV   L
Sbjct: 204 KATAIVDELENTIKPIEKEISELRGKIKNMEQVEEIAQR-LQQLKKKLAWSWVYDVDRQL 262

Query: 516 ALERE 530
             + E
Sbjct: 263 QEQTE 267


>At2g38950.1 68415.m04786 transcription factor jumonji (jmj) family
           protein / zinc finger (C5HC2 type) family protein
           contains Pfam domains, PF02375: jmjN domain, PF02373:
           jmjC domain and PF02928: C5HC2 zinc finger
          Length = 708

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -3

Query: 472 CCICWACLRATCNSCSALM*SYLCMKRIQCLMVC 371
           CC+C   L  +  +CS     Y C+  ++ L  C
Sbjct: 544 CCVCLGDLYLSAVNCSCSANRYSCLNHMRKLCAC 577


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,504,911
Number of Sequences: 28952
Number of extensions: 206258
Number of successful extensions: 467
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)