Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0794
         (434 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   0.95 
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   0.95 
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   5.1  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.4 bits (48), Expect = 0.95
 Identities = 8/35 (22%), Positives = 16/35 (45%)
 Frame = +3

Query: 216 HNVEHHTEPLHEWRDVSGHNLLSLMYSGSEEMDLY 320
           H++ HH +  H       H    +MY G +  +++
Sbjct: 165 HHMGHHMQEQHPQHHQPHHQQQHMMYGGQQGANMH 199


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.4 bits (48), Expect = 0.95
 Identities = 8/35 (22%), Positives = 16/35 (45%)
 Frame = +3

Query: 216 HNVEHHTEPLHEWRDVSGHNLLSLMYSGSEEMDLY 320
           H++ HH +  H       H    +MY G +  +++
Sbjct: 167 HHMGHHMQEQHPQHHQPHHQQQHMMYGGQQGANMH 201


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 186 STCIKFFNKFHNVEHHTEPLHEWRD 260
           S C K  N  HN  H+ E  H  ++
Sbjct: 27  SDCDKNQNTEHNYTHNNEMYHSVKE 51


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,964
Number of Sequences: 336
Number of extensions: 1860
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9670396
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)