Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0794
         (434 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su...    27   0.94 
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    27   1.2  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    25   3.8  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    25   6.7  
SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|...    25   6.7  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    24   8.8  

>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 27.5 bits (58), Expect = 0.94
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +3

Query: 87  LQISNMNTISKTARIVRKRPFRVSIEGNIGSGKSTCIKFFNKFHNVEHHTE 239
           L IS ++ I   A I R+    +   G++  GKST +K  +  H V    E
Sbjct: 5   LDISELSPIHP-AIISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNE 54


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 213 FHNVEHHTEPLHEWRDVSGHNLLSLMYSGSEEMDLYI 323
           + N+ +H+  L   RDVS H  L L  SGS++ D+ +
Sbjct: 646 YKNLRYHSRAL---RDVSYHPSLPLFCSGSDDGDVQV 679


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 214 NLLKNFIHVDFPDPMFPSIDT 152
           N+ KN +HV+ P P FP   T
Sbjct: 146 NIRKNSVHVNAPMPSFPEGST 166


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 271 WPLTSLHSCRGSVWCSTL*NLLKNFIHVDFP 179
           W LTSLH+ R  +W   +  LL  F   D P
Sbjct: 25  WILTSLHNGRIQLWDYRMGTLLDRFDGHDGP 55


>SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 277

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 141 RPFRVSIEGNIGSGKST 191
           RPF + I G  GSGKST
Sbjct: 24  RPFILGISGPQGSGKST 40


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +2

Query: 20  KPSILV*TTIDIMGLRVKLKINFTNIQY 103
           KP I+V T    + L+V++K+  ++I+Y
Sbjct: 189 KPDIVVATPGRFLHLKVEMKLELSSIEY 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,670,567
Number of Sequences: 5004
Number of extensions: 32151
Number of successful extensions: 100
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)