Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0794
(434 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1286 + 32387687-32387908,32388046-32389494 34 0.044
01_06_0371 + 28819035-28819322,28820541-28820595,28821179-288213... 30 0.71
06_01_0604 - 4358278-4358442,4358835-4358943,4359236-4359331,435... 28 2.9
03_04_0058 - 16915281-16915313,16915424-16915535,16915585-169169... 28 2.9
08_02_1428 + 27027787-27027999,27029345-27029524,27029700-270298... 28 3.8
02_01_0672 - 4989053-4990432,4990523-4991410,4995896-4996436,499... 27 5.0
03_03_0135 + 14748712-14748718,14748807-14748873,14748962-147490... 27 6.6
02_01_0668 - 4969141-4970520,4970597-4971463 27 6.6
08_02_1615 + 28257275-28258428,28258523-28259144 27 8.7
03_02_0569 - 9528027-9529256,9530019-9530260,9530374-9531161,953... 27 8.7
01_05_0215 + 19374279-19374327,19374629-19374633,19376902-193769... 27 8.7
>04_04_1286 + 32387687-32387908,32388046-32389494
Length = 556
Score = 34.3 bits (75), Expect = 0.044
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 147 FRVSIEGNIGSGKSTCIKFFNKFHNVEHHTEPL 245
F +++ GN+ TC++ F++FH +H+ PL
Sbjct: 396 FTINLNGNVMGAVETCMETFHRFHKYLNHSHPL 428
>01_06_0371 + 28819035-28819322,28820541-28820595,28821179-28821354,
28821481-28821702,28821796-28822034,28822107-28822632,
28822726-28822999,28823098-28823737,28823833-28824061,
28824299-28824565,28824700-28824963,28825045-28825689
Length = 1274
Score = 30.3 bits (65), Expect = 0.71
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 153 VSIEGNIGSGKSTCIKFFNKFHNVEHHTEPLHE 251
V++ G GSGKST I +F+N E T L E
Sbjct: 1062 VALVGESGSGKSTAIALLERFYNPESGTILLDE 1094
>06_01_0604 -
4358278-4358442,4358835-4358943,4359236-4359331,
4359823-4359956,4360639-4360905,4361225-4361310,
4361409-4361501,4361601-4361696,4361986-4362093,
4362473-4362493,4363856-4364156
Length = 491
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 243 LHEWRDVSGHNLLSLMYSGSEEMDLYIPXTMYIXSRLKIQTSHPW 377
LH + ++ + L ++SG + L + T Y + LK+ T PW
Sbjct: 384 LHIYHELIQYGLRIWVFSGDTDAVLPVTSTRYSINALKLPTVTPW 428
>03_04_0058 -
16915281-16915313,16915424-16915535,16915585-16916990,
16919112-16919282
Length = 573
Score = 28.3 bits (60), Expect = 2.9
Identities = 8/33 (24%), Positives = 19/33 (57%)
Frame = +3
Query: 147 FRVSIEGNIGSGKSTCIKFFNKFHNVEHHTEPL 245
F + + GN+ TC++ F+++H + + P+
Sbjct: 380 FSIELHGNVIGAVETCLESFHRYHKYLNFSHPI 412
>08_02_1428 +
27027787-27027999,27029345-27029524,27029700-27029806,
27030156-27030361,27030749-27030888,27031038-27031337
Length = 381
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +3
Query: 213 FHNVEHHTEPLHEWRDVSGHNLLSLMYSGSEEMDLYIPXTMYIXSRLKIQ 362
FH + H +H++R+V LLS+ G E Y P + + LK Q
Sbjct: 69 FHGAQVHRS-VHKFREVQQCTLLSIKTGGCSEDCSYCPQSSRYSTGLKAQ 117
>02_01_0672 - 4989053-4990432,4990523-4991410,4995896-4996436,
4996532-4997168,4997266-4997320,4997439-4997675
Length = 1245
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +3
Query: 156 SIEGNIGSGKSTCIKFFNKFHNVEHHTEPLHEWRDVSGHNLLSL 287
++ G GSGKST I +F++ + + + RD+ +NL +L
Sbjct: 1029 ALVGQSGSGKSTIIGLIERFYDPIRGSVKI-DGRDIKAYNLRAL 1071
>03_03_0135 +
14748712-14748718,14748807-14748873,14748962-14749076,
14749179-14749382,14749614-14749742,14749822-14749989,
14750648-14750808,14751490-14751580,14752277-14752436,
14752782-14752815,14753122-14753211,14754780-14754893,
14755000-14755123,14755652-14755762,14756378-14756478,
14756571-14756703
Length = 602
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +3
Query: 249 EWRDVSGHNLLSLMYSGSEEMDLYIPXTMYIXSRLKIQTS 368
EW +V N ++L+Y ++ D +I +Y+ +Q S
Sbjct: 203 EWTEVLSANAITLIYQNLQKFDDFISDQLYMPIHHHLQDS 242
>02_01_0668 - 4969141-4970520,4970597-4971463
Length = 748
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 156 SIEGNIGSGKSTCIKFFNKFHNVEHHTEPLHEWRDVSGHNL 278
+I G GSGKST I +F++ + + + RD+ +NL
Sbjct: 532 AIVGKSGSGKSTIIGLIERFYDPIRGSVKI-DGRDIKAYNL 571
>08_02_1615 + 28257275-28258428,28258523-28259144
Length = 591
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +3
Query: 153 VSIEGNIGSGKSTCIKFFNKFHNVEHHTEPL--HEWRDVS 266
+++ G+ GSGKST + +F+ T L H+ RD++
Sbjct: 463 IALVGSSGSGKSTVVSLIERFYEPNAGTILLDGHDLRDLN 502
>03_02_0569 - 9528027-9529256,9530019-9530260,9530374-9531161,
9531613-9531953,9532090-9532310,9532392-9532702,
9532779-9533038,9533691-9533891,9533992-9534167,
9534242-9534296,9535739-9536146
Length = 1410
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 153 VSIEGNIGSGKSTCIKFFNKFHNVEHHTEPLHEWRDVSGHNL 278
V++ G GSGKST I +F++ + L + RD+ NL
Sbjct: 1192 VAVVGVSGSGKSTIISLIERFYD-PVTGQVLLDGRDIKSFNL 1232
>01_05_0215 +
19374279-19374327,19374629-19374633,19376902-19376956,
19377159-19377334,19378020-19378241,19378334-19378572,
19379201-19379726,19379801-19380074,19380524-19381187,
19381604-19381832,19381924-19382190,19382308-19382496,
19382664-19383308
Length = 1179
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 150 RVSIEGNIGSGKSTCIKFFNKFHNVEHHTEPLHEWRDVSGHNLLSL 287
R+++ G GSGKST I +F++ + E L + D+ NL S+
Sbjct: 328 RMALVGESGSGKSTVISLVERFYDPQ-SGEVLIDGVDIRRINLGSI 372
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,718,494
Number of Sequences: 37544
Number of extensions: 176136
Number of successful extensions: 422
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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