Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0794
         (434 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23029| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.014
SB_23030| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.23 
SB_2807| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.31 
SB_33245| Best HMM Match : Sterile (HMM E-Value=4.5)                   28   2.9  
SB_48496| Best HMM Match : ResIII (HMM E-Value=0.96)                   27   6.7  
SB_8470| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.7  
SB_55825| Best HMM Match : Arch_fla_DE (HMM E-Value=2.9)               27   6.7  
SB_42825| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_52342| Best HMM Match : ABC_tran (HMM E-Value=5.29999e-41)          27   8.8  
SB_4758| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.8  

>SB_23029| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 272

 Score = 35.9 bits (79), Expect = 0.014
 Identities = 16/30 (53%), Positives = 22/30 (73%)
 Frame = +3

Query: 141 RPFRVSIEGNIGSGKSTCIKFFNKFHNVEH 230
           R   V+IEGNIGSGK+T +K+F +   VE+
Sbjct: 136 RKITVAIEGNIGSGKTTLLKYFRQNPIVEY 165


>SB_23030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 189

 Score = 31.9 bits (69), Expect = 0.23
 Identities = 11/26 (42%), Positives = 20/26 (76%)
 Frame = +3

Query: 135 RKRPFRVSIEGNIGSGKSTCIKFFNK 212
           +++   V++EGNIGSGK+T +K+  +
Sbjct: 27  KRKNVTVAVEGNIGSGKTTLLKYLER 52


>SB_2807| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 399

 Score = 31.5 bits (68), Expect = 0.31
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 135 RKRPFRVSIEGNIGSGKSTCIKFFNK 212
           RK  +R+   G  G+GKST I+FF K
Sbjct: 118 RKHSYRIGFSGPPGAGKSTFIEFFGK 143


>SB_33245| Best HMM Match : Sterile (HMM E-Value=4.5)
          Length = 244

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +3

Query: 87  LQISNMNTISKTARIVRKRPFRVSIEGNIGSGKSTCIKFFNKFHNVEHHT 236
           +Q  N+  + K A+I  +R   V+      SGK   IK  +K    EHHT
Sbjct: 136 IQYQNVLKVPKPAQIFEERKENVTAS----SGKKNAIKRLHKTSMTEHHT 181


>SB_48496| Best HMM Match : ResIII (HMM E-Value=0.96)
          Length = 343

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 292 YIRLSKLWPLTSLHSCRGSVWCST 221
           Y+RL    P + LH  +G +WC +
Sbjct: 131 YMRLRLCAPSSRLHDIKGRIWCQS 154


>SB_8470| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3133

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 135  RKRPFRVSIEGNIGSGKST-CIKFFNKF 215
            +KR  RV +EGN G GK+T C K  N +
Sbjct: 983  KKRMKRVLLEGNPGVGKTTLCKKLVNSW 1010


>SB_55825| Best HMM Match : Arch_fla_DE (HMM E-Value=2.9)
          Length = 208

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 135 RKRPFRVSIEGNIGSGKST-CIKFFNKF 215
           +KR  RV +EGN G GK+T C K  N +
Sbjct: 170 KKRMKRVLLEGNPGVGKTTLCKKLVNSW 197


>SB_42825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 381

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 127 RAVLLIVFILDICKIYF*LNSKAHNINRSLN*NRRFK 17
           R   ++VF+ DICK  F L +      RS++ N+ F+
Sbjct: 190 RRTKIMVFVCDICKKEFSLKTNLARHKRSVHGNQSFQ 226


>SB_52342| Best HMM Match : ABC_tran (HMM E-Value=5.29999e-41)
          Length = 336

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 153 VSIEGNIGSGKSTCIKFFNKFHNV 224
           +++ GN G GKST I+   +F++V
Sbjct: 171 LALVGNSGGGKSTIIRLLYRFYDV 194


>SB_4758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 788

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 127 RAVLLIVFILDICKIYF*LNSKAHNINRSLN*NRRFK 17
           R   ++VF+ DICK  F L +      RS++ N+ F+
Sbjct: 488 RRTRIMVFLCDICKKEFSLKTNLARHKRSVHGNQSFQ 524


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,590,555
Number of Sequences: 59808
Number of extensions: 206436
Number of successful extensions: 617
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)