Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0794
         (434 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59440.2 68418.m07450 thymidylate kinase family protein simil...    30   0.59 
At5g59440.1 68418.m07449 thymidylate kinase family protein simil...    30   0.59 
At1g72040.1 68414.m08327 deoxynucleoside kinase family contains ...    29   1.4  
At3g28380.1 68416.m03546 P-glycoprotein, putative similar to P-g...    28   2.4  
At2g20810.1 68415.m02448 glycosyl transferase family 8 protein c...    28   2.4  
At4g18050.1 68417.m02686 ABC transporter family protein contains...    27   4.1  
At5g59380.1 68418.m07441 methyl-CpG-binding domain-containing pr...    27   5.5  
At5g46540.1 68418.m05730 ABC transporter family protein contains...    27   7.2  
At4g28620.1 68417.m04092 ABC transporter family protein identica...    27   7.2  
At3g27440.1 68416.m03430 uracil phosphoribosyltransferase, putat...    27   7.2  
At2g18720.1 68415.m02180 eukaryotic translation initiation facto...    27   7.2  
At4g32880.1 68417.m04679 homeobox-leucine zipper transcription f...    26   9.5  
At3g48675.1 68416.m05315 hypothetical protein                          26   9.5  
At2g43360.1 68415.m05391 biotin synthase (BioB) (BIO2) identical...    26   9.5  

>At5g59440.2 68418.m07450 thymidylate kinase family protein similar
           to thymidylate kinase GI:291900
          Length = 224

 Score = 30.3 bits (65), Expect = 0.59
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
 Frame = +3

Query: 87  LQISNMNTISKTARIVRKRPFRVSIEGNIGSGKST-CIKFFNKFHNVEHHTEPLH-EWRD 260
           ++ SN ++  +T   V+ R   + +EG   SGKST C K  +  + + H TE      R+
Sbjct: 1   MESSNFSSGVRTESSVKPRGALIVLEGLDRSGKSTQCAKLLSFLNGLGHPTELWRFPDRE 60

Query: 261 VSGHNLLSLMYSGSEEMD 314
            S   ++S   S   ++D
Sbjct: 61  TSVGQMISAYLSNKSQLD 78


>At5g59440.1 68418.m07449 thymidylate kinase family protein similar
           to thymidylate kinase GI:291900
          Length = 263

 Score = 30.3 bits (65), Expect = 0.59
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
 Frame = +3

Query: 87  LQISNMNTISKTARIVRKRPFRVSIEGNIGSGKST-CIKFFNKFHNVEHHTEPLH-EWRD 260
           ++ SN ++  +T   V+ R   + +EG   SGKST C K  +  + + H TE      R+
Sbjct: 40  MESSNFSSGVRTESSVKPRGALIVLEGLDRSGKSTQCAKLLSFLNGLGHPTELWRFPDRE 99

Query: 261 VSGHNLLSLMYSGSEEMD 314
            S   ++S   S   ++D
Sbjct: 100 TSVGQMISAYLSNKSQLD 117


>At1g72040.1 68414.m08327 deoxynucleoside kinase family contains
           Pfam profile: PF01712 deoxynucleoside kinase
          Length = 580

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
 Frame = +3

Query: 138 KRPFRVSIEGNIGSGKSTCI-KFFNKFHN----VEHHTEPLHEWRDVS-GH-NLLSLMYS 296
           K+     +EGNI  GKST + +  N+       VE   EP+ +W+DV   H N+L   YS
Sbjct: 263 KKRLTFCVEGNISVGKSTFLQRIANETVELQDLVEIVPEPVDKWQDVGPDHFNILDAFYS 322


>At3g28380.1 68416.m03546 P-glycoprotein, putative similar to
            P-glycoprotein homologue GI:2292907 from [Hordeum vulgare
            subsp. vulgare]
          Length = 1240

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +3

Query: 156  SIEGNIGSGKSTCIKFFNKFHNVEHHTEPLHEWRDVSGHNLLSL 287
            +I G  GSGKST I    +F++    T  + + RD+  ++L SL
Sbjct: 1027 AIVGTSGSGKSTIIGLIERFYDPLKGTVKI-DGRDIRSYHLRSL 1069


>At2g20810.1 68415.m02448 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 536

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = +3

Query: 147 FRVSIEGNIGSGKSTCIKFFNKFHNVEHHTEPL 245
           F + +  N+     TC++ F+++H   +++ PL
Sbjct: 376 FSIDLNKNVNGAVETCMETFHRYHKYLNYSHPL 408


>At4g18050.1 68417.m02686 ABC transporter family protein contains Pfam
            profile: PF00005 ABC transporter; similar to
            multidrug-resistant protein CjMDR1 GI:14715462 from
            [Coptis japonica]
          Length = 1281

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 153  VSIEGNIGSGKSTCIKFFNKFHN 221
            V++ G  GSGKST I    +F+N
Sbjct: 1024 VALVGESGSGKSTVISMIERFYN 1046



 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 153 VSIEGNIGSGKSTCIKFFNKFHNVE 227
           V++ G  GSGKST I    +F++ E
Sbjct: 386 VALVGQSGSGKSTVISLIERFYDPE 410


>At5g59380.1 68418.m07441 methyl-CpG-binding domain-containing
           protein similar to testis specific methyl-CpG binding
           protein MBD2 [Homo sapiens] GI:3800801; contains Pfam
           profile PF01429: Methyl-CpG binding domain
          Length = 225

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 18/49 (36%), Positives = 22/49 (44%)
 Frame = +3

Query: 135 RKRPFRVSIEGNIGSGKSTCIKFFNKFHNVEHHTEPLHEWRDVSGHNLL 281
           ++RP +  I G  GSG+S  I   N    V H TE     R   G N L
Sbjct: 34  KRRPIQGGI-GISGSGESVRIGMANGTDQVNHQTESKSRKRAAPGDNWL 81


>At5g46540.1 68418.m05730 ABC transporter family protein contains
           Pfam profile: PF00005 ABC transporter; similar to
           multidrug-resistant protein CjMDR1 GI:14715462 from
           [Coptis japonica]
          Length = 1248

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 153 VSIEGNIGSGKSTCIKFFNKFHNVE 227
           V++ G  GSGKST I    +F++ E
Sbjct: 388 VALVGQSGSGKSTVISLIERFYDPE 412


>At4g28620.1 68417.m04092 ABC transporter family protein identical
           to half-molecule ABC transporter ATM2 GI:9964119 from
           [Arabidopsis thaliana]
          Length = 680

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 153 VSIEGNIGSGKSTCIKFFNKFHNVE 227
           V+I G+ GSGKST ++   +F +V+
Sbjct: 468 VAIVGSSGSGKSTILRMIFRFFDVD 492


>At3g27440.1 68416.m03430 uracil phosphoribosyltransferase, putative
           / UMP pyrophosphorylase, putative / UPRTase, putative
           similar to SP|O65583 Uracil phosphoribosyltransferase
           (EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
           {Arabidopsis thaliana}; contains Pfam profile PF00485:
           Phosphoribulokinase / Uridine kinase family
          Length = 465

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 111 ISKTARIVRKRPFRVSIEGNIGSGKST-CIKFFNKFHN 221
           +S +A    K+PF + + G   SGK+T C    ++ H+
Sbjct: 18  VSPSAPAPLKQPFVIGVAGGTASGKTTVCNMIMSQLHD 55


>At2g18720.1 68415.m02180 eukaryotic translation initiation factor 2
           subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
           putative 
          Length = 465

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +3

Query: 87  LQISNMNTISKTARIVRKRPFRVSIEGNIGSGKSTCIKFFNKFHNVEHHTE 239
           L ++ ++ +S    I R+    +   G++  GKST +K  +  H V+  +E
Sbjct: 15  LDVAQLHPLSPEV-ISRQATINIGTIGHVAHGKSTIVKAVSGVHTVKFKSE 64


>At4g32880.1 68417.m04679 homeobox-leucine zipper transcription
           factor (HB-8) identical to HD-zip transcription factor
           (athb-8) (GI:7270235) [Arabidopsis thaliana]
          Length = 833

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 162 EGNIGSGKSTCIKFFNKFHNVEHHTEPLHEWRDVSGHNLLSL 287
           +GN+ +  ++C        + +HH  P H+ RD S   LLS+
Sbjct: 122 QGNLATTDTSCESVVT---SGQHHLTPQHQPRDASPAGLLSI 160


>At3g48675.1 68416.m05315 hypothetical protein
          Length = 119

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -1

Query: 236 SMVFNIMKLVEEFYTC*FSRSYVSFN*HSKRSF-AYDTSC 120
           S +FN+   V+E Y   FS  + S      ++F A DT+C
Sbjct: 49  SSLFNVQGCVQEIYKSIFSGQFASIEAPCCKTFSAIDTNC 88


>At2g43360.1 68415.m05391 biotin synthase (BioB) (BIO2) identical to
           SP|P54967 Pfam profile PF04055: radical SAM domain
           protein
          Length = 378

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +3

Query: 213 FHNVEHHTEPLHEWRDVSGHNLLSLMYSGSEEMDLYIPXTMYIXSRLKIQ 362
           FH  + H   +H +R+V    LLS+   G  E   Y P +    + +K Q
Sbjct: 66  FHGAQVHRH-VHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYSTGVKAQ 114


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,328,073
Number of Sequences: 28952
Number of extensions: 155933
Number of successful extensions: 411
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)