Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0793
         (584 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)                  116   1e-26
SB_36505| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_8329| Best HMM Match : FTR1 (HMM E-Value=0.87)                      27   8.5  

>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
          Length = 229

 Score =  116 bits (279), Expect = 1e-26
 Identities = 53/79 (67%), Positives = 68/79 (86%)
 Frame = +2

Query: 347 IDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPNIL*RLGFVFLFTVGGLTGV 526
           +++DTRAYFT+AT+IIAVPTGIK+F  LAT++G  I  +  +L  +GFVFLFT+GGLTGV
Sbjct: 1   MNVDTRAYFTAATMIIAVPTGIKVFSWLATLYGGAIRLDTPMLWAIGFVFLFTIGGLTGV 60

Query: 527 ILANSSIDITLHDTYYVVA 583
           ILANSS+D+ +HDTYYVVA
Sbjct: 61  ILANSSLDVVMHDTYYVVA 79


>SB_36505| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +2

Query: 326 HHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPNIL 475
           HH+ T+ I +         T+I   PT I +   +  +H T IN +P ++
Sbjct: 14  HHLHTIIIHLHPTVIHLHPTVIFLHPTVIHLHPTVLNLHPTIINLHPTVI 63


>SB_8329| Best HMM Match : FTR1 (HMM E-Value=0.87)
          Length = 371

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +1

Query: 172 WTS*SLYFNFTRIWYNFSYYFTRKRKKRNFWLFRNNLCYTSNWVI 306
           W++  LY   + +W N   Y      + N  L+ N+ C  SN VI
Sbjct: 326 WSNAVLYTYHSCLWSNAVLYTNHSCLRSNAVLYTNHSCLRSNAVI 370


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,073,520
Number of Sequences: 59808
Number of extensions: 209494
Number of successful extensions: 396
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)