Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0792
         (497 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   4.8  
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    25   8.4  

>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -3

Query: 444  LVSCRIQSGEQLVLNVSGIITWTAMITLPHRG*HVPYFCYSYKK*GQFTN 295
            ++S + Q+  QL LNV   I+  + I + HRG +VP    S  K G   N
Sbjct: 1864 VISSQSQNISQL-LNVYDFISSHSDIFIEHRGRYVPILIDSLYKFGAIPN 1912


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
 Frame = +2

Query: 2   PGCRNRHE----DRARWSNRMKTSLLLFKNI 82
           P C N H     D ++W  R++ S  L KN+
Sbjct: 252 PRCENDHTTKETDGSKWMGRLRNSKSLMKNL 282


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,017,218
Number of Sequences: 5004
Number of extensions: 37936
Number of successful extensions: 56
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)