Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0792
         (497 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79)            30   0.92 
SB_20479| Best HMM Match : Collagen (HMM E-Value=1)                    29   2.8  
SB_38947| Best HMM Match : CD36 (HMM E-Value=1.4e-15)                  28   3.7  
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)                   27   8.6  
SB_57603| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_2799| Best HMM Match : rve (HMM E-Value=7.8e-26)                    27   8.6  

>SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79)
          Length = 1091

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -3

Query: 234 GDFSSENTAHFTGTGYSSTD-YSGHIRNLNS 145
           GD+SS +    T  GY S D Y+ H+R+L+S
Sbjct: 553 GDYSSMDDQRLTDDGYYSKDSYANHLRSLSS 583


>SB_20479| Best HMM Match : Collagen (HMM E-Value=1)
          Length = 1214

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +1

Query: 319 IGIAEIWYMSAPVGECD-HCCPRDDSTDIQYQLFTRLNPTRYQVIPVGLQN 468
           I +A IW +S+  G C+ H   RDD    ++  + + N    QV PVG++N
Sbjct: 425 IAVAFIWLLSSLKGNCEIHI--RDD----EFYPYVQFNLNDPQVSPVGIEN 469


>SB_38947| Best HMM Match : CD36 (HMM E-Value=1.4e-15)
          Length = 314

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = +1

Query: 337 WYMSAPVGECDHCCPRDDS---TDIQYQLFTRLNPTRYQVIPVGL 462
           WY+  P   C  C P  DS    +I Y + T +  +  +++ VG+
Sbjct: 118 WYVFTPELSCSGCDPEADSVTTVNIAYAIMTEVAKSYSRIVRVGI 162


>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
          Length = 796

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = -1

Query: 362 SPTGADMYHISAIPIKNEASLQTDGLTGMF*QF*QKNNNKVRLGIFHLKIPRISP 198
           SP    +  I+     N+A  +T GL   F    Q+ +N  R   FH + P  +P
Sbjct: 464 SPMSVGICRITESMSSNQAEKETSGLDPKFKALEQQQSNPPRKHKFHTQDPEKTP 518


>SB_57603| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 401

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 289 DLQACSDNFNKKIITKLDWG 230
           DL+   D +N+K+I K+ WG
Sbjct: 130 DLEMVPDEYNEKVIFKVGWG 149


>SB_2799| Best HMM Match : rve (HMM E-Value=7.8e-26)
          Length = 1058

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 289 DLQACSDNFNKKIITKLDWG 230
           DL+   D +N+K+I K+ WG
Sbjct: 829 DLEMVPDEYNEKVIFKVGWG 848


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,496,934
Number of Sequences: 59808
Number of extensions: 294207
Number of successful extensions: 677
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)