Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0788
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.2  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    28   1.2  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    27   1.6  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    27   2.9  
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.9  
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||...    25   6.6  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    25   8.8  
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch...    25   8.8  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    25   8.8  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    25   8.8  
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch...    25   8.8  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   8.8  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    25   8.8  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -3

Query: 368 LYADTSLSSSSPAHTTELSRQLSSSTSCRPRTSAFLSISKS 246
           + + +S SSSSP  T+      SSS+S    TS+ +S S S
Sbjct: 272 IISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSS 312



 Score = 25.0 bits (52), Expect = 8.8
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -3

Query: 362 ADTSLSSSSPAHTTELSRQLSSSTSCRPRTSAFLSISKSVLF 237
           + +S SSSSP  T+      SSS+S    T +  S+S S  F
Sbjct: 291 SSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSF 332


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -3

Query: 434 LKQASLAFGMDPSQSV*RFLAFLYADTSLSSSSPAHTTELSRQLSSSTSCRPRTSAFL 261
           L  ++   G   S +V     F+ ADT+ +S +PA    ++   S+STSC P T+  +
Sbjct: 140 LPDSTTTSGSQVSNAVEASSTFV-ADTTSTSCNPATVLIVTTSGSTSTSCPPPTTILI 196


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -3

Query: 365  YADTSLSSSSPAHTTELSRQLSSSTS 288
            Y D S+S  +P HTTE S +  SSTS
Sbjct: 1052 YTD-SMSQDAPNHTTEPSERRDSSTS 1076


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 441  PNAEASQSCIWHGSESECLKVF 376
            PNA A+   IWH  E+  LK F
Sbjct: 1321 PNANATDEEIWHALEAASLKQF 1342


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = -3

Query: 362 ADTSLSSSSPAHTTELSRQLSSSTSCRPRTSAFLSISKS 246
           A +S SSSS + ++ +S   SSS+S  P T++  S S S
Sbjct: 114 AASSSSSSSSSSSSLVSSTTSSSSSATPSTTSSSSSSSS 152


>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 214

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = +1

Query: 199 HNENDIVLVRIYGNKTDLLIDRKAEVRGRQEVDEES*RLSSVVWAGDDDDNEVSAYR 369
           H +++IV++ + GNKTDLL  R       Q    E+  LS +  +  D  N   A++
Sbjct: 111 HADSNIVIMLV-GNKTDLLHLRAVSTEEAQAFAAEN-NLSFIETSAMDASNVEEAFQ 165


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 193 TSHNENDIVLVRIYGNKTDLLI 258
           TSH +N ++L R+Y    +L I
Sbjct: 321 TSHPDNSLILQRLYSTNNELRI 342


>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 356 TSLSSSSPAHTTELSRQLSSSTSCRPRTSAFLSISKSVLFP 234
           +S SSSS +  T  S ++SSS      + A    +K V+ P
Sbjct: 169 SSSSSSSSSAATSTSTRVSSSAKASTSSGAIAYTTKCVVVP 209


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 268 AEVRGRQEVDEES*RLSSVVWAGDD 342
           A ++ R+E+DE+S  L +VV  GD+
Sbjct: 875 AYLKKRREIDEQSTALDAVVPTGDE 899


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 353 SLSSSSPAHTTELSRQLSSSTSCRPRTS 270
           SLS+ S A + E S  L S   C P TS
Sbjct: 195 SLSNPSTASSLEPSSPLGSEDECHPPTS 222


>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 356 TSLSSSSPAHTTELSRQLSSSTSCRPRTSAFLSISKSVLFP 234
           +S SSSS +  T  S ++SSS      + A    +K V+ P
Sbjct: 169 SSSSSSSSSAATSTSTRVSSSAKASTSSGAIAYTTKCVVVP 209


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 18/34 (52%), Positives = 21/34 (61%)
 Frame = -3

Query: 347 SSSSPAHTTELSRQLSSSTSCRPRTSAFLSISKS 246
           SSS P+  + +S  LSSSTS    TS  LSIS S
Sbjct: 566 SSSIPSTFSSVSSILSSSTSSPSSTS--LSISSS 597


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = -3

Query: 362 ADTSLSSSSPAHTTELSRQLSSSTSCRPRTSAFLSISKS 246
           + +S SSS  + ++  S + SSS+S   ++SA  S SKS
Sbjct: 179 SSSSSSSSKSSSSSSSSSKSSSSSSSSSKSSASPSSSKS 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,481,011
Number of Sequences: 5004
Number of extensions: 48302
Number of successful extensions: 208
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)