Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0788
(619 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0257 + 16170914-16171113,16171362-16171554,16171929-161720... 31 0.73
05_06_0207 + 26377836-26378201,26379785-26379906,26380025-263802... 31 0.73
05_01_0351 + 2750253-2751042,2751951-2751958,2752122-2752149,275... 31 0.73
01_06_0501 - 29836545-29836640,29836752-29836855,29837034-298370... 29 2.2
04_04_1657 - 35102751-35102868,35102987-35103504,35104065-351042... 29 3.9
04_03_1022 - 21778315-21779007 29 3.9
03_05_0725 + 27155736-27155746,27155798-27155949,27156108-271580... 29 3.9
07_01_0839 + 6823028-6823074,6823449-6823992,6827017-6828258 28 5.2
08_02_1512 + 27627740-27629009,27629111-27629256,27629842-276301... 27 9.0
08_01_0987 + 9979651-9979746,9979818-9980058,9980947-9981090,998... 27 9.0
>09_04_0257 +
16170914-16171113,16171362-16171554,16171929-16172034,
16172293-16172415,16172739-16172830,16173276-16173376,
16173458-16173524,16174016-16174108,16174247-16174375
Length = 367
Score = 31.1 bits (67), Expect = 0.73
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +1
Query: 217 VLVRIYGNKTDLLIDRKAEVR 279
V VR+YG TDL+IDRK E++
Sbjct: 111 VTVRLYGPNTDLVIDRKRELQ 131
>05_06_0207 +
26377836-26378201,26379785-26379906,26380025-26380220,
26380642-26380759,26380869-26380916,26380995-26381095,
26381178-26381285
Length = 352
Score = 31.1 bits (67), Expect = 0.73
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +1
Query: 217 VLVRIYGNKTDLLIDRKAEVR 279
VLVR+YG +L DR+AEVR
Sbjct: 72 VLVRVYGEGVELFFDREAEVR 92
>05_01_0351 +
2750253-2751042,2751951-2751958,2752122-2752149,
2754692-2754775,2755780-2757548
Length = 892
Score = 31.1 bits (67), Expect = 0.73
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 21 RNRHEGYLYSNSNSGKRYLWWDKPTSKKPK 110
R E +L SGKR +WWD+ T ++P+
Sbjct: 262 REGSEMHLAEPFGSGKRRVWWDRKTQEEPQ 291
>01_06_0501 -
29836545-29836640,29836752-29836855,29837034-29837081,
29837188-29837305,29837812-29838007,29838089-29838210,
29839409-29839831
Length = 368
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +1
Query: 217 VLVRIYGNKTDLLIDRKAEVR 279
VLVRIYG+ +L DR+ EVR
Sbjct: 91 VLVRIYGDGVELFFDREDEVR 111
>04_04_1657 -
35102751-35102868,35102987-35103504,35104065-35104211,
35104289-35106262,35106964-35107089,35107178-35107264,
35107335-35107424,35107725-35107811,35108248-35108300,
35109339-35109387
Length = 1082
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -3
Query: 359 DTSLSSSSPAHTTELSRQLSSSTSCRPRTSAFLSISK 249
D+SLSSSS T +LSS+ S + R+S + S+
Sbjct: 168 DSSLSSSSAYTTDSFENKLSSANSAKDRSSGEFTYSE 204
>04_03_1022 - 21778315-21779007
Length = 230
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -1
Query: 367 YMLTLHYHHRHQPTPLSSVVSFPHQPPAGHG 275
Y+ H HH H PTP + P P GHG
Sbjct: 84 YIPPHHPHHHHPPTPAPA----PSTTPGGHG 110
>03_05_0725 +
27155736-27155746,27155798-27155949,27156108-27158068,
27159169-27159397,27159506-27159634,27159725-27159838,
27160059-27160258,27160301-27160599,27160713-27160923,
27161017-27161172,27161290-27161447,27161532-27161724,
27162015-27162406,27162537-27162717,27162802-27163031,
27163108-27163753,27163833-27163902,27163994-27164244
Length = 1860
Score = 28.7 bits (61), Expect = 3.9
Identities = 21/60 (35%), Positives = 29/60 (48%)
Frame = -3
Query: 434 LKQASLAFGMDPSQSV*RFLAFLYADTSLSSSSPAHTTELSRQLSSSTSCRPRTSAFLSI 255
L + + + D S FLA LY D +L S SP ++ELS SS C+ S L +
Sbjct: 366 LDKITRGWAQDRSAQCSLFLAELYYDQALCSGSPLASSELSN--SSYHLCKVIQSVALEL 423
>07_01_0839 + 6823028-6823074,6823449-6823992,6827017-6828258
Length = 610
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -3
Query: 416 AFGMDPSQSV*RFLAFLYADTSLSSSSPAHTTELSRQLSSSTSCR 282
A+G++PS S +A Y L+ + A E+ QLS+S R
Sbjct: 342 AYGIEPSTSTQTMVARFYIHGGLTEKAEAVVKEMEAQLSNSKDGR 386
>08_02_1512 +
27627740-27629009,27629111-27629256,27629842-27630101,
27630346-27630412,27630511-27630545,27630818-27631587,
27631633-27631793
Length = 902
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 340 RHQPTPLSSVVSFPHQPPAGHGLQLFY 260
R QP P SSVVS+ H+P + +Y
Sbjct: 202 RSQPPPPSSVVSYEHRPQTVNATVHYY 228
>08_01_0987 +
9979651-9979746,9979818-9980058,9980947-9981090,
9981253-9981313,9981603-9982061,9982472-9982529,
9983579-9983839
Length = 439
Score = 27.5 bits (58), Expect = 9.0
Identities = 9/26 (34%), Positives = 19/26 (73%)
Frame = -1
Query: 403 IRVRVFEGFWLSYMLTLHYHHRHQPT 326
IR++ FE +++ + L H++H+ +PT
Sbjct: 333 IRLQGFERYYIQFNLDEHFYHQWRPT 358
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,020,630
Number of Sequences: 37544
Number of extensions: 309427
Number of successful extensions: 1020
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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