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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0788
         (619 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0257 + 16170914-16171113,16171362-16171554,16171929-161720...    31   0.73 
05_06_0207 + 26377836-26378201,26379785-26379906,26380025-263802...    31   0.73 
05_01_0351 + 2750253-2751042,2751951-2751958,2752122-2752149,275...    31   0.73 
01_06_0501 - 29836545-29836640,29836752-29836855,29837034-298370...    29   2.2  
04_04_1657 - 35102751-35102868,35102987-35103504,35104065-351042...    29   3.9  
04_03_1022 - 21778315-21779007                                         29   3.9  
03_05_0725 + 27155736-27155746,27155798-27155949,27156108-271580...    29   3.9  
07_01_0839 + 6823028-6823074,6823449-6823992,6827017-6828258           28   5.2  
08_02_1512 + 27627740-27629009,27629111-27629256,27629842-276301...    27   9.0  
08_01_0987 + 9979651-9979746,9979818-9980058,9980947-9981090,998...    27   9.0  

>09_04_0257 +
           16170914-16171113,16171362-16171554,16171929-16172034,
           16172293-16172415,16172739-16172830,16173276-16173376,
           16173458-16173524,16174016-16174108,16174247-16174375
          Length = 367

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = +1

Query: 217 VLVRIYGNKTDLLIDRKAEVR 279
           V VR+YG  TDL+IDRK E++
Sbjct: 111 VTVRLYGPNTDLVIDRKRELQ 131


>05_06_0207 +
           26377836-26378201,26379785-26379906,26380025-26380220,
           26380642-26380759,26380869-26380916,26380995-26381095,
           26381178-26381285
          Length = 352

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +1

Query: 217 VLVRIYGNKTDLLIDRKAEVR 279
           VLVR+YG   +L  DR+AEVR
Sbjct: 72  VLVRVYGEGVELFFDREAEVR 92


>05_01_0351 +
           2750253-2751042,2751951-2751958,2752122-2752149,
           2754692-2754775,2755780-2757548
          Length = 892

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 21  RNRHEGYLYSNSNSGKRYLWWDKPTSKKPK 110
           R   E +L     SGKR +WWD+ T ++P+
Sbjct: 262 REGSEMHLAEPFGSGKRRVWWDRKTQEEPQ 291


>01_06_0501 -
           29836545-29836640,29836752-29836855,29837034-29837081,
           29837188-29837305,29837812-29838007,29838089-29838210,
           29839409-29839831
          Length = 368

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +1

Query: 217 VLVRIYGNKTDLLIDRKAEVR 279
           VLVRIYG+  +L  DR+ EVR
Sbjct: 91  VLVRIYGDGVELFFDREDEVR 111


>04_04_1657 -
           35102751-35102868,35102987-35103504,35104065-35104211,
           35104289-35106262,35106964-35107089,35107178-35107264,
           35107335-35107424,35107725-35107811,35108248-35108300,
           35109339-35109387
          Length = 1082

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -3

Query: 359 DTSLSSSSPAHTTELSRQLSSSTSCRPRTSAFLSISK 249
           D+SLSSSS   T     +LSS+ S + R+S   + S+
Sbjct: 168 DSSLSSSSAYTTDSFENKLSSANSAKDRSSGEFTYSE 204


>04_03_1022 - 21778315-21779007
          Length = 230

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -1

Query: 367 YMLTLHYHHRHQPTPLSSVVSFPHQPPAGHG 275
           Y+   H HH H PTP  +    P   P GHG
Sbjct: 84  YIPPHHPHHHHPPTPAPA----PSTTPGGHG 110


>03_05_0725 +
           27155736-27155746,27155798-27155949,27156108-27158068,
           27159169-27159397,27159506-27159634,27159725-27159838,
           27160059-27160258,27160301-27160599,27160713-27160923,
           27161017-27161172,27161290-27161447,27161532-27161724,
           27162015-27162406,27162537-27162717,27162802-27163031,
           27163108-27163753,27163833-27163902,27163994-27164244
          Length = 1860

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 21/60 (35%), Positives = 29/60 (48%)
 Frame = -3

Query: 434 LKQASLAFGMDPSQSV*RFLAFLYADTSLSSSSPAHTTELSRQLSSSTSCRPRTSAFLSI 255
           L + +  +  D S     FLA LY D +L S SP  ++ELS   SS   C+   S  L +
Sbjct: 366 LDKITRGWAQDRSAQCSLFLAELYYDQALCSGSPLASSELSN--SSYHLCKVIQSVALEL 423


>07_01_0839 + 6823028-6823074,6823449-6823992,6827017-6828258
          Length = 610

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -3

Query: 416 AFGMDPSQSV*RFLAFLYADTSLSSSSPAHTTELSRQLSSSTSCR 282
           A+G++PS S    +A  Y    L+  + A   E+  QLS+S   R
Sbjct: 342 AYGIEPSTSTQTMVARFYIHGGLTEKAEAVVKEMEAQLSNSKDGR 386


>08_02_1512 +
           27627740-27629009,27629111-27629256,27629842-27630101,
           27630346-27630412,27630511-27630545,27630818-27631587,
           27631633-27631793
          Length = 902

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 340 RHQPTPLSSVVSFPHQPPAGHGLQLFY 260
           R QP P SSVVS+ H+P   +    +Y
Sbjct: 202 RSQPPPPSSVVSYEHRPQTVNATVHYY 228


>08_01_0987 +
           9979651-9979746,9979818-9980058,9980947-9981090,
           9981253-9981313,9981603-9982061,9982472-9982529,
           9983579-9983839
          Length = 439

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = -1

Query: 403 IRVRVFEGFWLSYMLTLHYHHRHQPT 326
           IR++ FE +++ + L  H++H+ +PT
Sbjct: 333 IRLQGFERYYIQFNLDEHFYHQWRPT 358


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,020,630
Number of Sequences: 37544
Number of extensions: 309427
Number of successful extensions: 1020
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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