Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0788
         (619 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58734-3|AAO91673.1|  326|Caenorhabditis elegans Choline kinase ...    49   3e-06
U58734-2|AAB52502.1|  342|Caenorhabditis elegans Choline kinase ...    49   3e-06
U64598-12|AAX88835.1|  408|Caenorhabditis elegans Choline kinase...    31   0.87 
U64598-11|AAK39220.1|  429|Caenorhabditis elegans Choline kinase...    31   0.87 
AC093703-5|AAL00865.1|  725|Caenorhabditis elegans Hypothetical ...    29   3.5  
Z66494-10|CAF31472.1|  500|Caenorhabditis elegans Hypothetical p...    28   6.1  
Z66494-9|CAA91260.1|  502|Caenorhabditis elegans Hypothetical pr...    28   6.1  
U53139-1|AAS80341.1|   90|Caenorhabditis elegans Hypothetical pr...    28   6.1  

>U58734-3|AAO91673.1|  326|Caenorhabditis elegans Choline kinase c
           protein 1, isoformb protein.
          Length = 326

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 25/79 (31%), Positives = 42/79 (53%)
 Frame = +1

Query: 64  ESDIYGGINLLLKNLRPTWPLENVKFKVFTDGITNKLVCCQLSTSHNENDIVLVRIYGNK 243
           ++D       +L  LRP W    + F+ F+ GITNK+      T H     V+ R++G+ 
Sbjct: 18  QTDCENSAREILTKLRPEWKSPEITFEYFSVGITNKIFSAGFGTEH-----VIFRVFGHN 72

Query: 244 TDLLIDRKAEVRGRQEVDE 300
           T+ +IDR+ EV   +++ E
Sbjct: 73  TNKVIDRENEVIAWKQLAE 91


>U58734-2|AAB52502.1|  342|Caenorhabditis elegans Choline kinase c
           protein 1, isoforma protein.
          Length = 342

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 25/79 (31%), Positives = 42/79 (53%)
 Frame = +1

Query: 64  ESDIYGGINLLLKNLRPTWPLENVKFKVFTDGITNKLVCCQLSTSHNENDIVLVRIYGNK 243
           ++D       +L  LRP W    + F+ F+ GITNK+      T H     V+ R++G+ 
Sbjct: 18  QTDCENSAREILTKLRPEWKSPEITFEYFSVGITNKIFSAGFGTEH-----VIFRVFGHN 72

Query: 244 TDLLIDRKAEVRGRQEVDE 300
           T+ +IDR+ EV   +++ E
Sbjct: 73  TNKVIDRENEVIAWKQLAE 91


>U64598-12|AAX88835.1|  408|Caenorhabditis elegans Choline kinase a
           protein 2, isoformb protein.
          Length = 408

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
 Frame = +1

Query: 115 TWPLENVKFKVFTDGITNKLVCCQLSTSH----NENDIVLVRIYGN 240
           T PLE+++      G++N L  C+LS  +    NE + VL+R+Y N
Sbjct: 49  TVPLEHLRISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFN 94


>U64598-11|AAK39220.1|  429|Caenorhabditis elegans Choline kinase a
           protein 2, isoforma protein.
          Length = 429

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
 Frame = +1

Query: 115 TWPLENVKFKVFTDGITNKLVCCQLSTSH----NENDIVLVRIYGN 240
           T PLE+++      G++N L  C+LS  +    NE + VL+R+Y N
Sbjct: 70  TVPLEHLRISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFN 115


>AC093703-5|AAL00865.1|  725|Caenorhabditis elegans Hypothetical
           protein Y20F4.5 protein.
          Length = 725

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +3

Query: 24  NRHEGYLYSNSNSGKRYL---WWDKPTSKKPKTYMAFRKRKIQGF 149
           NR E   +S  N+GKRYL     +KP S  P T +     KI GF
Sbjct: 656 NRLERRFHSVRNTGKRYLTPRLPNKPPSALPHTILNLFAIKISGF 700


>Z66494-10|CAF31472.1|  500|Caenorhabditis elegans Hypothetical
           protein C34C6.6b protein.
          Length = 500

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 310 RLSSVVWAGDDDDNEVSAYRKAKNLQTL*LGSMPNARLACFSIRSY 447
           RL + +  GD     +SAYR+A  L    + +  N  ++C  + SY
Sbjct: 397 RLGATLANGDHTAEAISAYREALKLYPTYVRARYNLGISCMQLSSY 442


>Z66494-9|CAA91260.1|  502|Caenorhabditis elegans Hypothetical
           protein C34C6.6a protein.
          Length = 502

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 310 RLSSVVWAGDDDDNEVSAYRKAKNLQTL*LGSMPNARLACFSIRSY 447
           RL + +  GD     +SAYR+A  L    + +  N  ++C  + SY
Sbjct: 399 RLGATLANGDHTAEAISAYREALKLYPTYVRARYNLGISCMQLSSY 444


>U53139-1|AAS80341.1|   90|Caenorhabditis elegans Hypothetical
           protein F18E3.11 protein.
          Length = 90

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/51 (35%), Positives = 31/51 (60%)
 Frame = -3

Query: 398 SQSV*RFLAFLYADTSLSSSSPAHTTELSRQLSSSTSCRPRTSAFLSISKS 246
           ++ V  F  F +  TS SSSS + T  +SR+ SS++S  PR S  +++ ++
Sbjct: 8   AEIVSEFSGFQHLHTSASSSSISTTQVVSRK-SSTSSDAPRHSLNITVGEA 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,682,321
Number of Sequences: 27780
Number of extensions: 265733
Number of successful extensions: 907
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)