Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0788
         (619 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26830.1 68415.m03219 choline/ethanolamine kinase family prot...    35   0.038
At4g36280.1 68417.m05159 ATP-binding region, ATPase-like domain-...    30   1.1  
At2g32840.2 68415.m04021 proline-rich family protein  Common fam...    30   1.1  
At2g32840.1 68415.m04020 proline-rich family protein  Common fam...    30   1.1  
At1g02460.1 68414.m00195 glycoside hydrolase family 28 protein /...    30   1.4  
At1g74320.1 68414.m08606 choline kinase, putative similar to GmC...    28   5.7  
At4g39880.1 68417.m05650 ribosomal protein L23 family protein co...    27   7.5  
At1g25180.1 68414.m03127 hypothetical protein                          27   7.5  
At1g25112.1 68414.m03120 hypothetical protein                          27   7.5  
At1g25025.1 68414.m03116 hypothetical protein                          27   7.5  
At1g71697.1 68414.m08288 choline kinase, putative similar to GmC...    27   10.0 

>At2g26830.1 68415.m03219 choline/ethanolamine kinase family protein
           similar to SP|Q9HBU6 Ethanolamine kinase (EC 2.7.1.82)
           (EKI){Homo sapiens}, GmCK3p [Glycine max] GI:1438883;
           contains Pfam profile PF01633: Choline/ethanolamine
           kinase
          Length = 374

 Score = 35.1 bits (77), Expect = 0.038
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
 Frame = +1

Query: 94  LLKNLRPTW-PLENVKFKV--FTDGITNKLVCCQLSTSHNENDIVLVRIYGNKTDLLIDR 264
           L K+L   W  L++  F V   + GITN L+   +    N+   V VR+YG  T+ +I+R
Sbjct: 46  LCKDLFKNWGELDDSLFSVERVSGGITNLLLKVSVKEDTNKEVSVTVRLYGPNTEYVINR 105

Query: 265 KAEV 276
           + E+
Sbjct: 106 EREI 109


>At4g36280.1 68417.m05159 ATP-binding region, ATPase-like
           domain-containing protein low similarity to microrchidia
           [Mus musculus] GI:5410255; contains Pfam profile
           PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
           HSP90-like domain protein
          Length = 626

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -1

Query: 394 RVFEGFWLSYMLTLHYHHRHQPTPLSSVVSFPHQPP 287
           ++   +W S+   L YH    P   S  ++ P QPP
Sbjct: 456 KIVYSYWYSHCHLLGYHKYQMPADKSKKIAIPDQPP 491


>At2g32840.2 68415.m04021 proline-rich family protein  Common family
           member: At1g04930 [Arabidopsis thaliana]
          Length = 291

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 8/54 (14%)
 Frame = -1

Query: 355 LHYHHRHQ-----PTPL---SSVVSFPHQPPAGHGLQLFYQLVNLFYFHKSGRG 218
           LH HH HQ     P P+   +SV + PHQPP      L Y       F  SGRG
Sbjct: 60  LHRHHPHQNIYTNPLPIRRSNSVTNSPHQPPHPDPSSLIYP------FGSSGRG 107


>At2g32840.1 68415.m04020 proline-rich family protein  Common family
           member: At1g04930 [Arabidopsis thaliana]
          Length = 337

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 8/54 (14%)
 Frame = -1

Query: 355 LHYHHRHQ-----PTPL---SSVVSFPHQPPAGHGLQLFYQLVNLFYFHKSGRG 218
           LH HH HQ     P P+   +SV + PHQPP      L Y       F  SGRG
Sbjct: 60  LHRHHPHQNIYTNPLPIRRSNSVTNSPHQPPHPDPSSLIYP------FGSSGRG 107


>At1g02460.1 68414.m00195 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           polygalacturonase PG1 GI:5669846, PG2 GI:5669848 from
           (Glycine max); contains PF00295: Glycosyl hydrolases
           family 28 (polygalacturonases)
          Length = 491

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 352 HYHHRHQPTPLSSVVSFPHQPPAG 281
           H HH  +P P SS +S P  PP G
Sbjct: 41  HNHHSSKPKPPSSSISQPPTPPPG 64


>At1g74320.1 68414.m08606 choline kinase, putative similar to GmCK2p
           choline kinase gi|1438881|gb|AAC49375
          Length = 350

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 217 VLVRIYGNKTDLLIDRKAEVR 279
           VLVRIYG   ++  DR+ E+R
Sbjct: 70  VLVRIYGEGVEIFFDREDEIR 90


>At4g39880.1 68417.m05650 ribosomal protein L23 family protein
           contains Pfam profile  PF00276: ribosomal protein L23
          Length = 178

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 259 DRKAEVRGRQEVDEES*RLSSVVWAGDDDDNEVSAYRKAK 378
           DRK++V+G   V+EE  + S   W    +  E+  Y K K
Sbjct: 107 DRKSKVKGSSFVEEEDDKKSH--WLDRKEKREIGGYGKGK 144


>At1g25180.1 68414.m03127 hypothetical protein
          Length = 258

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -3

Query: 431 KQASLAFGMDPSQSV*RFLAFLY-ADTSLSSSSPAHTTELSRQLSSSTSCRPRTSAFLSI 255
           +  S +    PSQ+  +     Y A  S+SSSS AH ++ +RQLS      P+  A  S+
Sbjct: 29  RSVSSSSSAHPSQAARQLSPPKYPASRSVSSSSSAHPSQAARQLSP-----PKYPASRSV 83

Query: 254 SKS 246
           S S
Sbjct: 84  SNS 86


>At1g25112.1 68414.m03120 hypothetical protein
          Length = 258

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -3

Query: 431 KQASLAFGMDPSQSV*RFLAFLY-ADTSLSSSSPAHTTELSRQLSSSTSCRPRTSAFLSI 255
           +  S +    PSQ+  +     Y A  S+SSSS AH ++ +RQLS      P+  A  S+
Sbjct: 29  RSVSSSSSAHPSQAARQLSPPKYPASRSVSSSSSAHPSQAARQLSP-----PKYPASRSV 83

Query: 254 SKS 246
           S S
Sbjct: 84  SNS 86


>At1g25025.1 68414.m03116 hypothetical protein
          Length = 258

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -3

Query: 431 KQASLAFGMDPSQSV*RFLAFLY-ADTSLSSSSPAHTTELSRQLSSSTSCRPRTSAFLSI 255
           +  S +    PSQ+  +     Y A  S+SSSS AH ++ +RQLS      P+  A  S+
Sbjct: 29  RSVSSSSSAHPSQAARQLSPPKYPASRSVSSSSSAHPSQAARQLSP-----PKYPASRSV 83

Query: 254 SKS 246
           S S
Sbjct: 84  SNS 86


>At1g71697.1 68414.m08288 choline kinase, putative similar to GmCK2p
           choline kinase gi|1438881|gb|AAC49375
          Length = 346

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +1

Query: 124 LENVKFKVFTDGITNKLVCCQLSTSHNEN--DIVLVRIYGNKTDLLIDRKAEVR 279
           LE ++       +TN++      T + E+    VLVRIYG+  DL  +R  E++
Sbjct: 37  LERLEVVPLKGAMTNEVYQINWPTLNGEDVHRKVLVRIYGDGVDLFFNRGDEIK 90


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,988,329
Number of Sequences: 28952
Number of extensions: 254409
Number of successful extensions: 932
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)