Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0786
         (445 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D9D19D Cluster: PREDICTED: tubulin tyrosine liga...    33   2.1  
UniRef50_Q14679 Cluster: Tubulin--tyrosine ligase-like protein 4...    33   2.1  
UniRef50_P36132 Cluster: Putative glycoprotein endopeptidase KAE...    33   2.1  
UniRef50_Q4T1D9 Cluster: Chromosome undetermined SCAF10660, whol...    32   6.4  
UniRef50_Q8NA19 Cluster: L(3)mbt-like protein 4; n=16; Theria|Re...    32   6.4  
UniRef50_UPI00006CD8BB Cluster: cation channel family protein; n...    31   8.5  

>UniRef50_UPI0000D9D19D Cluster: PREDICTED: tubulin tyrosine
           ligase-like family, member 4 isoform 2; n=2;
           Catarrhini|Rep: PREDICTED: tubulin tyrosine ligase-like
           family, member 4 isoform 2 - Macaca mulatta
          Length = 970

 Score = 33.5 bits (73), Expect = 2.1
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = +1

Query: 235 TMSASQKESWAAAIDLLTNDECRLLLEVEDFFNDDCDLLKNFPS 366
           T     ++ +A+ +D+LT D+ R+L+E+ED F+      + FPS
Sbjct: 757 TQKIPDQDFYASVLDVLTPDDVRILVEMEDEFSRRGQFERIFPS 800


>UniRef50_Q14679 Cluster: Tubulin--tyrosine ligase-like protein 4;
            n=26; Eumetazoa|Rep: Tubulin--tyrosine ligase-like
            protein 4 - Homo sapiens (Human)
          Length = 1199

 Score = 33.5 bits (73), Expect = 2.1
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = +1

Query: 235  TMSASQKESWAAAIDLLTNDECRLLLEVEDFFNDDCDLLKNFPS 366
            T     ++ +A+ +D+LT D+ R+L+E+ED F+      + FPS
Sbjct: 986  TQKIPDQDFYASVLDVLTPDDVRILVEMEDEFSRRGQFERIFPS 1029


>UniRef50_P36132 Cluster: Putative glycoprotein endopeptidase KAE1;
           n=17; Eukaryota|Rep: Putative glycoprotein endopeptidase
           KAE1 - Saccharomyces cerevisiae (Baker's yeast)
          Length = 386

 Score = 33.5 bits (73), Expect = 2.1
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = +3

Query: 105 HNIKMLAKMAPSQDKLVHLHKTPTSLDINPSGLL 206
           +NI+ LAK AP ++ LV L  T   +D++ SG+L
Sbjct: 210 YNIEQLAKKAPHKENLVELPYTVKGMDLSMSGIL 243


>UniRef50_Q4T1D9 Cluster: Chromosome undetermined SCAF10660, whole
           genome shotgun sequence; n=5; Euteleostomi|Rep:
           Chromosome undetermined SCAF10660, whole genome shotgun
           sequence - Tetraodon nigroviridis (Green puffer)
          Length = 139

 Score = 31.9 bits (69), Expect = 6.4
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +2

Query: 266 LRPSICSLTMSAVCCSKLRISSMMIVICLKTFRALQRRSKSITPRVSTR 412
           + P IC L +   CC ++ ++ M+  +CL     LQ  SK+  P+V  R
Sbjct: 63  IHPEICRLFIQLQCCLEMFVTEMLKSMCL--LGELQLPSKNSGPKVDLR 109


>UniRef50_Q8NA19 Cluster: L(3)mbt-like protein 4; n=16; Theria|Rep:
           L(3)mbt-like protein 4 - Homo sapiens (Human)
          Length = 623

 Score = 31.9 bits (69), Expect = 6.4
 Identities = 22/66 (33%), Positives = 34/66 (51%)
 Frame = -2

Query: 396 GVIDFDLRCSARKVFKQITIIIEEILNFEQQTALIVSEQIDGRSP*LLLTRTHCCNDLVP 217
           GV D      AR    ++   ++ +L  E+       EQIDG++  LLLT+T    D+V 
Sbjct: 531 GVADIRASQVARWTVDEVAEFVQSLLGCEEHAKCFKKEQIDGKA-FLLLTQT----DIVK 585

Query: 216 RMRIKV 199
            M+IK+
Sbjct: 586 VMKIKL 591


>UniRef50_UPI00006CD8BB Cluster: cation channel family protein; n=1;
            Tetrahymena thermophila SB210|Rep: cation channel family
            protein - Tetrahymena thermophila SB210
          Length = 3291

 Score = 31.5 bits (68), Expect = 8.5
 Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
 Frame = -2

Query: 405  ETRGVIDFDLRCSARKVFKQITIIIEEIL--NFEQQTALIVSEQID 274
            E RG+++ DL+    ++  + TI++  +L  N EQQ  L + +Q+D
Sbjct: 2082 EKRGIVEDDLKDQIDEMVSKSTILLVSLLEGNTEQQIPLYIDQQLD 2127


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 415,848,214
Number of Sequences: 1657284
Number of extensions: 7703900
Number of successful extensions: 17023
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17019
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 22761518346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)