Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0786
         (445 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar...    28   0.56 
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom...    26   2.3  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   4.0  
SPBC3D6.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   4.0  
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual    25   4.0  
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    25   5.2  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   6.9  
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo...    24   9.1  
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa...    24   9.1  

>SPAC1006.07 |||translation initiation factor
           eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 28.3 bits (60), Expect = 0.56
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +1

Query: 271 AIDLLTNDECRLLLEVEDFFN 333
           +I+ +TND+ R++ E+E F+N
Sbjct: 358 SINFVTNDDVRMMREIEQFYN 378


>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
 Frame = +3

Query: 33  FSCNFAITMGF*YLIVCTPACAFTHN-IKMLAKMAPS-QDKLVHLHKTPTSLDINPSGLL 206
           F C   I++ F   I    A A  H  I  L  + P  +D   H  K      I+P  LL
Sbjct: 310 FVCPSCISLDFDLQI---QAFARQHRVISTLGVVYPEREDSCFHKIKAAQWHQISPRSLL 366

Query: 207 FAFVELNHYNNECESEGVMGCGHRF 281
           F F E NH +++     ++  G ++
Sbjct: 367 FQFQEQNHIHHKKIRRKLLAAGWKW 391


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 289 NDECRLLLEVEDFFNDDC 342
           NDECR L +   FF+ +C
Sbjct: 535 NDECRRLKQCNHFFHREC 552


>SPBC3D6.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 95

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 144 DKLVHLHKTPTSLDINPSGLLFAFVELNH 230
           D + H  K  +S   NPS LLF    L H
Sbjct: 59  DGIPHSRKKVSSAHFNPSTLLFLLKRLGH 87


>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 304

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = +3

Query: 120 LAKMAPSQDKLVHLH----KTPTSLDINPSGLLFAFVELNHYNNECESE 254
           L +    ++KLV+L      T T LD +   ++ A V+ N Y N C+++
Sbjct: 170 LEEFESQKEKLVYLSADSDNTITELDEDKIYIIGAIVDKNRYKNLCQNK 218


>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 96  HTLVCKRLDTRNPS*SQNYTKKQNTPRA 13
           H    KR+ + +PS + N  +KQ  P+A
Sbjct: 267 HNKAVKRMQSSSPSTTSNTNEKQKGPKA 294


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -2

Query: 414  WRVETRGVIDFDLRCSARKVFKQITIIIEEILNFEQQTALIVSEQIDGR 268
            W   T+ V     R S RKV + + +  EE    +++ ALI  + +  R
Sbjct: 2143 WSTPTKLVEPSQFRASPRKVDQAVVLSSEEKEILQKKYALIAEDNLIAR 2191


>SPAC20G8.10c ||SPAC3A12.01c|beclin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 464

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 298 CRLLLEVEDFFNDDCDLLKNFPSA 369
           C  L+  +D ++DD   LKN P +
Sbjct: 8   CHSLINFKDVYDDDLLKLKNLPKS 31


>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 153 VHLHKTPTSLDINPSGLLFAFVELN 227
           VH H T  S + N  G +F+  ELN
Sbjct: 94  VHSHLTNNSTESNKKGKIFSRKELN 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,714,728
Number of Sequences: 5004
Number of extensions: 32331
Number of successful extensions: 70
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)